PMC Links for GEO Profiles (Select 82020135) - PMC

Select item 93869751.

Autologous K63 deubiquitylation within the BRCA1-A complex licenses DNA damage recognition

Qinqin Jiang, Martina Foglizzo, Yaroslav I. Morozov, Xuejiao Yang, Arindam Datta, Lei Tian, Vaughn Thada, Weihua Li, Elton Zeqiraj, Roger A. Greenberg

J Cell Biol. 2022 Sep 5; 221(9): e202111050. Published online 2022 Aug 8. doi: 10.1083/jcb.202111050

PMCID:: PMC9386975

Abstract Article PDF–8.1M

Select item 79387702.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 39058483.

Co-operation of BRCA1 and POH1 relieves the barriers posed by 53BP1 and RAP80 to resection

Andreas Kakarougkas, Amani Ismail, Yoko Katsuki, Raimundo Freire, Atsushi Shibata, Penny A. Jeggo

Nucleic Acids Res. 2013 Dec; 41(22): 10298–10311. Published online 2013 Sep 5. doi: 10.1093/nar/gkt802

PMCID:: PMC3905848

Abstract Article PDF–11M

Select item 34828304.

RAP80 is Critical in Maintaining Genomic Stability and Suppressing Tumor Development

Zhengyu Yin, Daniel Menendez, Michael A. Resnick, John E. French, Kyathanahalli S. Janardhan, Anton M. Jetten

Cancer Res. Author manuscript; available in PMC 2013 Oct 1.

Published in final edited form as: Cancer Res. 2012 Oct 1; 72(19): 5080–5090. Published online 2012 Aug 15. doi: 10.1158/0008-5472.CAN-12-1484

PMCID:: PMC3482830

Abstract Article PDF–3.1M

Select item 34081505.

Rap80 Protein Recruitment to DNA Double-strand Breaks Requires Binding to Both Small Ubiquitin-like Modifier (SUMO) and Ubiquitin Conjugates

Xin Hu, Atanu Paul, Bin Wang

J Biol Chem. 2012 Jul 20; 287(30): 25510–25519. Published online 2012 Jun 11. doi: 10.1074/jbc.M112.374116

PMCID:: PMC3408150

Abstract Article PDF–3.1M

Select item 33911106.

RAP80 Protein Is Important for Genomic Stability and Is Required for Stabilizing BRCA1-A Complex at DNA Damage Sites in Vivo

Jiaxue Wu, Chao Liu, Junjie Chen, Xiaochun Yu

J Biol Chem. 2012 Jun 29; 287(27): 22919–22926. Published online 2012 Apr 25. doi: 10.1074/jbc.M112.351007

PMCID:: PMC3391110

Abstract Article PDF–2.4M

Select item 33157487.

BRCA1 tumor suppressor network: focusing on its tail

Bin Wang

Cell Biosci. 2012; 2: 6. Published online 2012 Feb 27. doi: 10.1186/2045-3701-2-6

PMCID:: PMC3315748

Abstract Article PDF–710K

Select item 31780598.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 29455889.

Differential Regulation of JAMM Domain Deubiquitinating Enzyme Activity within the RAP80 Complex

Jeffrey Patterson-Fortin, Genze Shao, Heidi Bretscher, Troy E. Messick, Roger A. Greenberg

J Biol Chem. 2010 Oct 1; 285(40): 30971–30981. Published online 2010 Jul 22. doi: 10.1074/jbc.M110.135319

PMCID:: PMC2945588

Abstract Article PDF–2.1M

Select item 274312710.

RAD18 transmits DNA damage signaling to elicit homologous recombination repair

Jun Huang, Michael S. Y. Huen, Hongtae Kim, Charles Chung Yun Leung, J N Mark Glover, Xiaochun Yu, Junjie Chen

Nat Cell Biol. Author manuscript; available in PMC 2009 Nov 1.

Published in final edited form as: Nat Cell Biol. 2009 May; 11(5): 592–603. Published online 2009 Apr 26. doi: 10.1038/ncb1865

PMCID:: PMC2743127

Abstract Article PDF–3.4M

Select item 273516911.

Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by tandem UIMs of RAP80

Yusuke Sato, Azusa Yoshikawa, Hisatoshi Mimura, Masami Yamashita, Atsushi Yamagata, Shuya Fukai

EMBO J. 2009 Aug 19; 28(16): 2461–2468. Published online 2009 Jun 18. doi: 10.1038/emboj.2009.160

PMCID:: PMC2735169

Abstract Article PDF–963K

Select item 263067212.

Histone Ubiquitination Associates with BRCA1-Dependent DNA Damage Response

Jiaxue Wu, Michael S. Y. Huen, Lin-Yu Lu, Lin Ye, Yali Dou, Mats Ljungman, Junjie Chen, Xiaochun Yu

Mol Cell Biol. 2009 Feb; 29(3): 849–860. Published online 2008 Nov 17. doi: 10.1128/MCB.01302-08

PMCID:: PMC2630672

Abstract Article PDF–1.9M

Select item 204908713.

RAP80 interacts with the SUMO-conjugating enzyme UBC9 and is a novel target for sumoylation

Jun Yan, Xiao-Ping Yang, Yong-Sik Kim, Joung Hyuck Joo, Anton M. Jetten

Biochem Biophys Res Commun. Author manuscript; available in PMC 2008 Oct 12.

Published in final edited form as: Biochem Biophys Res Commun. 2007 Oct 12; 362(1): 132–138. Published online 2007 Aug 8. doi: 10.1016/j.bbrc.2007.07.158

PMCID:: PMC2049087

Abstract Article PDF–280K

Select item 52892814.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 31099215.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098016.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 28355417.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

Select item 16551118.

BayGenomics: a resource of insertional mutations in mouse embryonic stem cells

Doug Stryke, Michiko Kawamoto, Conrad C. Huang, Susan J. Johns, Leslie A. King, Courtney A. Harper, Elaine C. Meng, Roy E. Lee, Alice Yee, Larry L'Italien, Pao-Tien Chuang, Stephen G. Young, William C. Skarnes, Patricia C. Babbitt, Thomas E. Ferrin

Nucleic Acids Res. 2003 Jan 1; 31(1): 278–281. doi: 10.1093/nar/gkg064

PMCID:: PMC165511

Abstract Article PDF–217K

Select item 13924119.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 2980020.

Database resources of the National Center for Biotechnology Information

David L. Wheeler, Deanna M. Church, Alex E. Lash, Detlef D. Leipe, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Tatiana A. Tatusova, Lukas Wagner, Barbara A. Rapp

Nucleic Acids Res. 2001 Jan 1; 29(1): 11–16. doi: 10.1093/nar/29.1.11

PMCID:: PMC29800

Abstract Article PDF–101K

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