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Items: 20

Select item 102265591.

Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting posttranscriptional transgene silencing

Jérémie Bazin, Emilie Elvira-Matelot, Thomas Blein, Vincent Jauvion, Nathalie Bouteiller, Jun Cao, Martin D Crespi, Hervé Vaucheret

Plant Cell. 2023 Jun; 35(6): 1917–1935. Published online 2023 Mar 27. doi: 10.1093/plcell/koad091

PMCID:: PMC10226559

Abstract Article PDF–14M

Select item 87139822.

Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2

Akihito Fukudome, Jasleen Singh, Vibhor Mishra, Eswar Reddem, Francisco Martinez-Marquez, Sabine Wenzel, Rui Yan, Momoko Shiozaki, Zhiheng Yu, Joseph Che-Yen Wang, Yuichiro Takagi, Craig S. Pikaard

Proc Natl Acad Sci U S A. 2021 Dec 21; 118(51): e2115899118. Published online 2021 Dec 13. doi: 10.1073/pnas.2115899118

PMCID:: PMC8713982

Abstract Article PDF–2.4M

Select item 66980593.

Reaction mechanisms of Pol IV, RDR2 and DCL3 drive RNA channeling in the siRNA-directed DNA methylation pathway

Jasleen Singh, Vibhor Mishra, Feng Wang, Hsiao-Yun Huang, Craig S. Pikaard

Mol Cell. Author manuscript; available in PMC 2020 Aug 8.

Published in final edited form as: Mol Cell. 2019 Aug 8; 75(3): 576–589.e5. doi: 10.1016/j.molcel.2019.07.008

PMCID:: PMC6698059

Abstract Article PDF–2.7M

Select item 47168384.

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

Todd Blevins, Ram Podicheti, Vibhor Mishra, Michelle Marasco, Jing Wang, Doug Rusch, Haixu Tang, Craig S Pikaard

eLife. 2015; 4: e09591. Published online 2015 Oct 2. doi: 10.7554/eLife.09591

PMCID:: PMC4716838

Abstract Article PDF–4.2M

Select item 43152975.

Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis

Shaofang Li, Lee E. Vandivier, Bin Tu, Lei Gao, So Youn Won, Shengben Li, Binglian Zheng, Brian D. Gregory, Xuemei Chen

Genome Res. 2015 Feb; 25(2): 235–245. doi: 10.1101/gr.182238.114

PMCID:: PMC4315297

Abstract Article PDF–1.7M

Select item 37869056.

The Role of Hydrogen Peroxide and Nitric Oxide in the Induction of Plant-Encoded RNA-Dependent RNA Polymerase 1 in the Basal Defense against Tobacco Mosaic Virus

Yang-Wen-Ke Liao, Zeng-Hui Sun, Yan-Hong Zhou, Kai Shi, Xin Li, Guan-Qun Zhang, Xiao-Jian Xia, Zhi-Xiang Chen, Jing-Quan Yu

PLoS One. 2013; 8(9): e76090. Published online 2013 Sep 30. doi: 10.1371/journal.pone.0076090

PMCID:: PMC3786905

Abstract Article PDF–2.9M

Select item 36578157.

DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV

Heng Zhang, Ze-Yang Ma, Liang Zeng, Kaori Tanaka, Cui-Jun Zhang, Jun Ma, Ge Bai, Pengcheng Wang, Su-Wei Zhang, Zhang-Wei Liu, Tao Cai, Kai Tang, Renyi Liu, Xiaobing Shi, Xin-Jian He, Jian-Kang Zhu

Proc Natl Acad Sci U S A. 2013 May 14; 110(20): 8290–8295. Published online 2013 May 1. doi: 10.1073/pnas.1300585110

PMCID:: PMC3657815

Abstract Article PDF–972K

Select item 35328178.

In vitro transcription activities of Pol IV, Pol V and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing

Jeremy R. Haag, Thomas S. Ream, Michelle Marasco, Carrie D. Nicora, Angela D. Norbeck, Ljiljana Pasa-Tolic, Craig S. Pikaard

Mol Cell. Author manuscript; available in PMC 2013 Jun 14.

Published in final edited form as: Mol Cell. 2012 Dec 14; 48(5): 811–818. Published online 2012 Nov 8. doi: 10.1016/j.molcel.2012.09.027

PMCID:: PMC3532817

Abstract Article PDF–3.8M

Select item 34670479.

IBM1, a JmjC domain-containing histone demethylase, is involved in the regulation of RNA-directed DNA methylation through the epigenetic control of RDR2 and DCL3 expression in Arabidopsis

Di Fan, Yan Dai, Xuncheng Wang, Zhenjie Wang, Hang He, Hongchun Yang, Ying Cao, Xing Wang Deng, Ligeng Ma

Nucleic Acids Res. 2012 Oct; 40(18): 8905–8916. Published online 2012 Jul 5. doi: 10.1093/nar/gks647

PMCID:: PMC3467047

Abstract Article PDF–6.2M

Select item 342518510.

RDR1 and SGS3, Components of RNA-Mediated Gene Silencing, Are Required for the Regulation of Cuticular Wax Biosynthesis in Developing Inflorescence Stems of Arabidopsis

Patricia Lam, Lifang Zhao, Heather E. McFarlane, Mytyl Aiga, Vivian Lam, Tanya S. Hooker, Ljerka Kunst

Plant Physiol. 2012 Aug; 159(4): 1385–1395. Published online 2012 Jun 11. doi: 10.1104/pp.112.199646

PMCID:: PMC3425185

Abstract Article PDF–999K

Select item 337887511.

A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation

Meng Xie, Guodong Ren, Pedro Costa-Nunes, Olga Pontes, Bin Yu

Nucleic Acids Res. 2012 May; 40(10): 4422–4431. Published online 2012 Jan 2. doi: 10.1093/nar/gks034

PMCID:: PMC3378875

Abstract Article PDF–4.0M

Select item 324856212.

The RNA Silencing Enzyme RNA Polymerase V Is Required for Plant Immunity

Ana López, Vicente Ramírez, Javier García-Andrade, Victor Flors, Pablo Vera

PLoS Genet. 2011 Dec; 7(12): e1002434. Published online 2011 Dec 29. doi: 10.1371/journal.pgen.1002434

PMCID:: PMC3248562

Abstract Article PDF–750K

Select item 314100813.

SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV

Julie A. Law, Ajay A. Vashisht, James A. Wohlschlegel, Steven E. Jacobsen

PLoS Genet. 2011 Jul; 7(7): e1002195. Published online 2011 Jul 21. doi: 10.1371/journal.pgen.1002195

PMCID:: PMC3141008

Abstract Article PDF–1.4M

Select item 284542214.

Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection

Hernan Garcia-Ruiz, Atsushi Takeda, Elisabeth J. Chapman, Christopher M. Sullivan, Noah Fahlgren, Katherine J. Brempelis, James C. Carrington

Plant Cell. 2010 Feb; 22(2): 481–496. Published online 2010 Feb 26. doi: 10.1105/tpc.109.073056

Correction in:: Plant Cell. 2015 Mar; 27(3): 944–945.

PMCID:: PMC2845422

Abstract Article PDF–1.9M

Select item 277494715.

Loss of RNA–Dependent RNA Polymerase 2 (RDR2) Function Causes Widespread and Unexpected Changes in the Expression of Transposons, Genes, and 24-nt Small RNAs

Yi Jia, Damon R. Lisch, Kazuhiro Ohtsu, Michael J. Scanlon, Dan Nettleton, Patrick S. Schnable

PLoS Genet. 2009 Nov; 5(11): e1000737. Published online 2009 Nov 20. doi: 10.1371/journal.pgen.1000737

PMCID:: PMC2774947

Abstract Article PDF–306K

Select item 276892216.

A Dual Role for the S-Locus Receptor Kinase in Self-Incompatibility and Pistil Development Revealed by an Arabidopsis rdr6 Mutation

Titima Tantikanjana, Noreen Rizvi, Mikhail E. Nasrallah, June B. Nasrallah

Plant Cell. 2009 Sep; 21(9): 2642–2654. doi: 10.1105/tpc.109.067801

PMCID:: PMC2768922

Abstract Article PDF–1.4M

Select item 196454617.

Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis

C. A. Brosnan, N. Mitter, M. Christie, N. A. Smith, P. M. Waterhouse, B. J. Carroll

Proc Natl Acad Sci U S A. 2007 Sep 11; 104(37): 14741–14746. Published online 2007 Sep 4. doi: 10.1073/pnas.0706701104

PMCID:: PMC1964546

Abstract Article PDF–758K

Select item 195571118.

Suppression of Antiviral Silencing by Cucumber Mosaic Virus 2b Protein in Arabidopsis Is Associated with Drastically Reduced Accumulation of Three Classes of Viral Small Interfering RNAs

Juan A. Diaz-Pendon, Feng Li, Wan-Xiang Li, Shou-Wei Ding

Plant Cell. 2007 Jun; 19(6): 2053–2063. doi: 10.1105/tpc.106.047449

PMCID:: PMC1955711

Abstract Article PDF–1016K

Select item 148892019.

MicroRNA-Targeted and Small Interfering RNA–Mediated mRNA Degradation Is Regulated by Argonaute, Dicer, and RNA-Dependent RNA Polymerase in Arabidopsis

Michael Ronemus, Matthew W. Vaughn, Robert A. Martienssen

Plant Cell. 2006 Jul; 18(7): 1559–1574. doi: 10.1105/tpc.106.042127

PMCID:: PMC1488920

Abstract Article PDF–608K

Select item 35066720.

Genetic and Functional Diversification of Small RNA Pathways in Plants

Zhixin Xie, Lisa K Johansen, Adam M Gustafson, Kristin D Kasschau, Andrew D Lellis, Daniel Zilberman, Steven E Jacobsen, James C Carrington

PLoS Biol. 2004 May; 2(5): e104. Published online 2004 Feb 24. doi: 10.1371/journal.pbio.0020104

PMCID:: PMC350667

Abstract Article PDF–411K

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