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Items: 16

1.
DNA conformational dynamics in the context-dependent non-CG CHH methylation by plant methyltransferase DRM2
Jianbin Chen, Jiuwei Lu, Jie Liu, Jian Fang, Xuehua Zhong, Jikui Song
J Biol Chem. 2023 Dec; 299(12): 105433. Published online 2023 Nov 4. doi: 10.1016/j.jbc.2023.105433
PMCID:
PMC10711165
AbstractArticlePDF–2.3M
2.
UVR8 interacts with de novo DNA methyltransferase and suppresses DNA methylation in Arabidopsis
Jianjun Jiang, Jie Liu, Dean Sanders, Shuiming Qian, Wendan Ren, Jikui Song, Fengquan Liu, Xuehua Zhong
Nat Plants. Author manuscript; available in PMC 2021 Jul 25.
Published in final edited form as: Nat Plants. 2021 Feb; 7(2): 184–197. Published online 2021 Jan 25. doi: 10.1038/s41477-020-00843-4
PMCID:
PMC7889724
AbstractArticlePDF–4.5M
3.
Contiguous and stochastic CHH methylation patterns of plant DRM2 and CMT2 revealed by single-read methylome analysis
Keith D. Harris, Assaf Zemach
Genome Biol. 2020; 21: 194. Published online 2020 Aug 6. doi: 10.1186/s13059-020-02099-9
PMCID:
PMC7412668
AbstractArticlePDF–1.7M
4.
UAP56 associates with DRM2 and is localized to chromatin in Arabidopsis
Jacinthe Azevedo, Claire Picart, Laurent Dureau, Dominique Pontier, Sylvie Jaquinod‐Kieffer, Mohamed‐Ali Hakimi, Thierry Lagrange
FEBS Open Bio. 2019 May; 9(5): 973–985. Published online 2019 Apr 5. doi: 10.1002/2211-5463.12627
PMCID:
PMC6487834
AbstractArticlePDF–559K
5.
Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM
Mathieu Ingouff, Benjamin Selles, Caroline Michaud, Thiet M. Vu, Frédéric Berger, Andrea J. Schorn, Daphné Autran, Matthias Van Durme, Moritz K. Nowack, Robert A. Martienssen, Daniel Grimanelli
Genes Dev. 2017 Jan 1; 31(1): 72–83. doi: 10.1101/gad.289397.116
PMCID:
PMC5287115
AbstractArticlePDF–300K
6.
Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases
Xuehua Zhong, Jiamu Du, Christopher J. Hale, Javier Gallego-Bartolome, Suhua Feng, Ajay A. Vashisht, Joanne Chory, James A. Wohlschlegel, Dinshaw J. Patel, Steven E. Jacobsen
Cell. Author manuscript; available in PMC 2015 May 22.
Published in final edited form as: Cell. 2014 May 22; 157(5): 1050–1060. doi: 10.1016/j.cell.2014.03.056
PMCID:
PMC4123750
AbstractArticlePDF–1.7M
7.
The RNA Silencing Enzyme RNA Polymerase V Is Required for Plant Immunity
Ana López, Vicente Ramírez, Javier García-Andrade, Victor Flors, Pablo Vera
PLoS Genet. 2011 Dec; 7(12): e1002434. Published online 2011 Dec 29. doi: 10.1371/journal.pgen.1002434
PMCID:
PMC3248562
AbstractArticlePDF–750K
8.
Genetic Evidence That DNA Methyltransferase DRM2 Has a Direct Catalytic Role in RNA-Directed DNA Methylation in Arabidopsis thaliana
Ulf Naumann, Lucia Daxinger, Tatsuo Kanno, Changho Eun, Quan Long, Zdravko J. Lorkovic, Marjori Matzke, Antonius J. M. Matzke
Genetics. 2011 Mar; 187(3): 977–979. doi: 10.1534/genetics.110.125401
PMCID:
PMC3048785
AbstractArticlePDF–1.0M
9.
Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation
Angelique Deleris, Maxim V C Greenberg, Israel Ausin, Rona W Y Law, Guillaume Moissiard, Daniel Schubert, Steven E Jacobsen
EMBO Rep. 2010 Dec; 11(12): 950–955. Published online 2010 Nov 5. doi: 10.1038/embor.2010.158
PMCID:
PMC2999860
AbstractArticlePDF–604K
10.
The De Novo Cytosine Methyltransferase DRM2 Requires Intact UBA Domains and a Catalytically Mutated Paralog DRM3 during RNA–Directed DNA Methylation in Arabidopsis thaliana
Ian R. Henderson, Angelique Deleris, William Wong, Xuehua Zhong, Hang Gyeong Chin, Gregory A. Horwitz, Krystyna A. Kelly, Sriharsa Pradhan, Steven E. Jacobsen
PLoS Genet. 2010 Oct; 6(10): e1001182. Published online 2010 Oct 28. doi: 10.1371/journal.pgen.1001182
PMCID:
PMC2965745
AbstractArticlePDF–1.8M
11.
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation
Zhihuan Gao, Hai-Liang Liu, Lucia Daxinger, Olga Pontes, Xinjian He, Weiqiang Qian, Huixin Lin, Mingtang Xie, Zdravko J. Lorkovic, Shoudong Zhang, Daisuke Miki, Xianqiang Zhan, Dominique Pontier, Thierry Lagrange, Hailing Jin, Antonius J. Matzke, Marjori Matzke, Craig S. Pikaard, Jian-Kang Zhu
Nature. Author manuscript; available in PMC 2010 Nov 6.
Published in final edited form as: Nature. 2010 May 6; 465(7294): 106–109. Published online 2010 Apr 21. doi: 10.1038/nature09025
PMCID:
PMC2865564
AbstractArticlePDF–557K
12.
Avid interactions underlie the K63-linked polyubiquitin binding specificities observed for UBA domains
Joshua J. Sims, Aydin Haririnia, Bryan C. Dickinson, David Fushman, Robert E. Cohen
Nat Struct Mol Biol. Author manuscript; available in PMC 2010 Feb 1.
Published in final edited form as: Nat Struct Mol Biol. 2009 Aug; 16(8): 883–889. Published online 2009 Jul 20. doi: 10.1038/nsmb.1637
PMCID:
PMC2744598
AbstractArticlePDF–1.6M
13.
SRA-Domain Proteins Required for DRM2-Mediated De Novo DNA Methylation
Lianna M. Johnson, Julie A. Law, Anuj Khattar, Ian R. Henderson, Steven E. Jacobsen
PLoS Genet. 2008 Nov; 4(11): e1000280. Published online 2008 Nov 28. doi: 10.1371/journal.pgen.1000280
PMCID:
PMC2582956
AbstractArticlePDF–705K
14.
The SRA methyl-cytosine-binding domain links DNA and histone methylation
Lianna M. Johnson, Magnolia Bostick, Xiaoyu Zhang, Edward Kraft, Ian Henderson, Judy Callis, Steven E. Jacobsen
Curr Biol. Author manuscript; available in PMC 2007 Apr 10.
Published in final edited form as: Curr Biol. 2007 Feb 20; 17(4): 379–384. Published online 2007 Jan 18. doi: 10.1016/j.cub.2007.01.009
PMCID:
PMC1850948
AbstractArticlePDF–1.2M
15.
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
Xiaofeng Cao, Steven E. Jacobsen
Proc Natl Acad Sci U S A. 2002 Dec 10; 99(Suppl 4): 16491–16498. doi: 10.1073/pnas.162371599
PMCID:
PMC139913
AbstractArticlePDF–388K
16.
Conserved plant genes with similarity to mammalian de novo DNA methyltransferases
Xiaofeng Cao, Nathan M. Springer, Michael G. Muszynski, Ronald L. Phillips, Shawn Kaeppler, Steven E. Jacobsen
Proc Natl Acad Sci U S A. 2000 Apr 25; 97(9): 4979–4984. doi: 10.1073/pnas.97.9.4979
PMCID:
PMC18343
AbstractArticlePDF–253K

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