PMC Links for GEO Profiles (Select 72158400) - PMC

Result Filters

Links from GEO Profiles

Items: 15

Select item 72970451.

A pan-plant protein complex map reveals deep conservation and novel assemblies

Claire D. McWhite, Ophelia Papoulas, Kevin Drew, Rachael M. Cox, Viviana June, Oliver Xiaoou Dong, Taejoon Kwon, Cuihong Wan, Mari L. Salmi, Stanley J. Roux, Jr., Karen S. Browning, Z. Jeffrey Chen, Pamela C. Ronald, Edward M. Marcotte

Cell. Author manuscript; available in PMC 2021 Apr 16.

Published in final edited form as: Cell. 2020 Apr 16; 181(2): 460–474.e14. Published online 2020 Mar 18. doi: 10.1016/j.cell.2020.02.049

PMCID:: PMC7297045

Abstract Article PDF–4.0M

Select item 67534942.

The NRPD1 N-terminus contains a Pol IV-specific motif that is critical for genome surveillance in Arabidopsis

Laura Ferrafiat, David Pflieger, Jasleen Singh, Michael Thieme, Marcel Böhrer, Christophe Himber, Aude Gerbaud, Etienne Bucher, Craig S Pikaard, Todd Blevins

Nucleic Acids Res. 2019 Sep 26; 47(17): 9037–9052. Published online 2019 Aug 2. doi: 10.1093/nar/gkz618

PMCID:: PMC6753494

Abstract Article PDF–5.5M

Select item 67534863.

The Pol IV largest subunit CTD quantitatively affects siRNA levels guiding RNA-directed DNA methylation

Jered M Wendte, Jeremy R Haag, Olga M Pontes, Jasleen Singh, Sara Metcalf, Craig S Pikaard

Nucleic Acids Res. 2019 Sep 26; 47(17): 9024–9036. Published online 2019 Jul 22. doi: 10.1093/nar/gkz615

PMCID:: PMC6753486

Abstract Article PDF–3.8M

Select item 57989514.

RNA polymerases IV and V influence the 3′ boundaries of Polymerase II transcription units in Arabidopsis

Anastasia McKinlay, Ram Podicheti, Jered M. Wendte, Ross Cocklin, Douglas B. Rusch

RNA Biol. 2018; 15(2): 269–279. Published online 2017 Dec 21. doi: 10.1080/15476286.2017.1409930

PMCID:: PMC5798951

Abstract Article PDF–967K

Select item 47168385.

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

Todd Blevins, Ram Podicheti, Vibhor Mishra, Michelle Marasco, Jing Wang, Doug Rusch, Haixu Tang, Craig S Pikaard

eLife. 2015; 4: e09591. Published online 2015 Oct 2. doi: 10.7554/eLife.09591

PMCID:: PMC4716838

Abstract Article PDF–4.2M

Select item 42603546.

SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis

Yong-Feng Han, Kun Dou, Ze-Yang Ma, Su-Wei Zhang, Huan-Wei Huang, Lin Li, Tao Cai, She Chen, Jian-Kang Zhu, Xin-Jian He

Cell Res. 2014 Dec; 24(12): 1445–1465. Published online 2014 Nov 25. doi: 10.1038/cr.2014.156

PMCID:: PMC4260354

Abstract Article PDF–3.6M

Select item 36578157.

DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV

Heng Zhang, Ze-Yang Ma, Liang Zeng, Kaori Tanaka, Cui-Jun Zhang, Jun Ma, Ge Bai, Pengcheng Wang, Su-Wei Zhang, Zhang-Wei Liu, Tao Cai, Kai Tang, Renyi Liu, Xiaobing Shi, Xin-Jian He, Jian-Kang Zhu

Proc Natl Acad Sci U S A. 2013 May 14; 110(20): 8290–8295. Published online 2013 May 1. doi: 10.1073/pnas.1300585110

PMCID:: PMC3657815

Abstract Article PDF–972K

Select item 33788758.

A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation

Meng Xie, Guodong Ren, Pedro Costa-Nunes, Olga Pontes, Bin Yu

Nucleic Acids Res. 2012 May; 40(10): 4422–4431. Published online 2012 Jan 2. doi: 10.1093/nar/gks034

PMCID:: PMC3378875

Abstract Article PDF–4.0M

Select item 31410089.

SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV

Julie A. Law, Ajay A. Vashisht, James A. Wohlschlegel, Steven E. Jacobsen

PLoS Genet. 2011 Jul; 7(7): e1002195. Published online 2011 Jul 21. doi: 10.1371/journal.pgen.1002195

PMCID:: PMC3141008

Abstract Article PDF–1.4M

Select item 294682310.

Subunit Compositions of the RNA-Silencing Enzymes PoI IV and PoI V Reveal Their Origins as Specialized Forms of RNA Polymerase II

Thomas S. Ream, Jeremy R. Haag, Andrzej T. Wierzbicki, Carrie D. Nicora, Angela Norbeck, Jian-Kang Zhu, Gretchen Hagen, Thomas J. Guilfoyle, Ljiljana Paša-Tolić, Craig S. Pikaard

Mol Cell. Author manuscript; available in PMC 2010 Sep 28.

Published in final edited form as: Mol Cell. 2009 Jan 30; 33(2): 192–203. Published online 2008 Dec 24. doi: 10.1016/j.molcel.2008.12.015

PMCID:: PMC2946823

Abstract Article PDF–7.0M

Select item 280009311.

Intergenic transcription by RNA Polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis

Binglian Zheng, Zhengming Wang, Shengben Li, Bin Yu, Jin-Yuan Liu, Xuemei Chen

Genes Dev. 2009 Dec 15; 23(24): 2850–2860. doi: 10.1101/gad.1868009

PMCID:: PMC2800093

Abstract Article PDF–973K

Select item 264854712.

NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation

Xin-Jian He, Yi-Feng Hsu, Olga Pontes, Jianhua Zhu, Jian Lu, Ray A. Bressan, Craig Pikaard, Co-Shine Wang, Jian-Kang Zhu

Genes Dev. 2009 Feb 1; 23(3): 318–330. doi: 10.1101/gad.1765209

PMCID:: PMC2648547

Abstract Article PDF–1.4M

Select item 196454613.

Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis

C. A. Brosnan, N. Mitter, M. Christie, N. A. Smith, P. M. Waterhouse, B. J. Carroll

Proc Natl Acad Sci U S A. 2007 Sep 11; 104(37): 14741–14746. Published online 2007 Sep 4. doi: 10.1073/pnas.0706701104

PMCID:: PMC1964546

Abstract Article PDF–758K

Select item 181033814.

Role of RNA polymerase IV in plant small RNA metabolism

Xiaoyu Zhang, Ian R. Henderson, Cheng Lu, Pamela J. Green, Steven E. Jacobsen

Proc Natl Acad Sci U S A. 2007 Mar 13; 104(11): 4536–4541. Published online 2007 Mar 5. doi: 10.1073/pnas.0611456104

PMCID:: PMC1810338

Abstract Article PDF–309K

Select item 119957315.

Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis

Dominique Pontier, Galina Yahubyan, Danielle Vega, Agnès Bulski, Julio Saez-Vasquez, Mohamed-Ali Hakimi, Silva Lerbs-Mache, Vincent Colot, Thierry Lagrange

Genes Dev. 2005 Sep 1; 19(17): 2030–2040. doi: 10.1101/gad.348405