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Items: 1 to 20 of 36

1.
TFOFinder: Python program for identifying purine-only double-stranded stretches in the predicted secondary structure(s) of RNA targets
Atara Neugroschl, Irina E. Catrina
PLoS Comput Biol. 2023 Aug; 19(8): e1011418. Published online 2023 Aug 25. doi: 10.1371/journal.pcbi.1011418
PMCID:
PMC10484449
AbstractArticlePDF–3.1M
2.
Screening of Drosophila microRNA-degradation sequences reveals Argonaute1 mRNA’s role in regulating miR-999
Peike Sheng, Lu Li, Tianqi Li, Yuzhi Wang, Nicholas M. Hiers, Jennifer S. Mejia, Jossie S. Sanchez, Lei Zhou, Mingyi Xie
Nat Commun. 2023; 14: 2108. Published online 2023 Apr 13. doi: 10.1038/s41467-023-37819-9
PMCID:
PMC10102002
AbstractArticlePDF–3.2M
3.
Endogenous transcripts direct microRNA degradation in Drosophila, and this targeted degradation is required for proper embryonic development
Elena R. Kingston, Lianne W. Blodgett, David P. Bartel
Mol Cell. Author manuscript; available in PMC 2023 Oct 20.
Published in final edited form as: Mol Cell. 2022 Oct 20; 82(20): 3872–3884.e9. Published online 2022 Sep 22. doi: 10.1016/j.molcel.2022.08.029
PMCID:
PMC9648618
AbstractArticlePDF–1.8M
4.
The conserved Pelado/ZSWIM8 protein regulates actin dynamics by promoting linear actin filament polymerization
Claudia Molina-Pelayo, Patricio Olguin, Marek Mlodzik, Alvaro Glavic
Life Sci Alliance. 2022 Dec; 5(12): e202201484. Published online 2022 Aug 8. doi: 10.26508/lsa.202201484
PMCID:
PMC9375228
AbstractArticlePDF–3.6M
5.
DDX17 is involved in DNA damage repair and modifies FUS toxicity in an RGG-domain dependent manner
Tyler R. Fortuna, Sukhleen Kour, Eric N. Anderson, Caroline Ward, Dhivyaa Rajasundaram, Christopher J. Donnelly, Andreas Hermann, Hala Wyne, Frank Shewmaker, Udai Bhan Pandey
Acta Neuropathol. Author manuscript; available in PMC 2022 Feb 19.
Published in final edited form as: Acta Neuropathol. 2021 Sep; 142(3): 515–536. Published online 2021 Jun 1. doi: 10.1007/s00401-021-02333-z
PMCID:
PMC8856901
AbstractArticlePDF–3.8M
6.
The ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation
Charlie Y. Shi, Elena R. Kingston, Benjamin Kleaveland, Daniel H. Lin, Michael W. Stubna, David P. Bartel
Science. Author manuscript; available in PMC 2021 Aug 11.
Published in final edited form as: Science. 2020 Dec 18; 370(6523): eabc9359. Published online 2020 Nov 12. doi: 10.1126/science.abc9359
PMCID:
PMC8356967
AbstractArticlePDF–1.2M
7.
Ago2 protects Drosophila siRNAs and microRNAs from target-directed degradation, even in the absence of 2′-O-methylation
Elena R. Kingston, David P. Bartel
RNA. 2021 Jun; 27(6): 710–724. doi: 10.1261/rna.078746.121
Correction in:
RNA. 2021 Dec; 27(12): 1617.
PMCID:
PMC8127995
AbstractArticlePDF–1.7M
8.
Genetic Basis of Natural Variation in Spontaneous Grooming in Drosophila melanogaster
Aya Yanagawa, Wen Huang, Akihiko Yamamoto, Ayako Wada-Katsumata, Coby Schal, Trudy F. C. Mackay
G3 (Bethesda) 2020 Sep; 10(9): 3453–3460. Published online 2020 Jul 29. doi: 10.1534/g3.120.401360
PMCID:
PMC7467001
AbstractArticlePDF–1.5M
9.
A Genetic Screen for Genes That Impact Peroxisomes in Drosophila Identifies Candidate Genes for Human Disease
Hillary K. Graves, Sharayu Jangam, Kai Li Tan, Antonella Pignata, Elaine S. Seto, Shinya Yamamoto, Michael F. Wangler
G3 (Bethesda) 2020 Jan; 10(1): 69–77. Published online 2019 Nov 25. doi: 10.1534/g3.119.400803
PMCID:
PMC6945042
AbstractArticlePDF–2.2M
10.
Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila
Hagar Meltzer, Efrat Marom, Idan Alyagor, Oded Mayseless, Victoria Berkun, Netta Segal-Gilboa, Tamar Unger, David Luginbuhl, Oren Schuldiner
Nat Commun. 2019; 10: 2113. Published online 2019 May 8. doi: 10.1038/s41467-019-10140-0
PMCID:
PMC6506539
AbstractArticlePDF–6.5M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
Neutral Competition for Drosophila Follicle and Cyst Stem Cell Niches Requires Vesicle Trafficking Genes
Matthew S. Cook, Coralie Cazin, Marc Amoyel, Shinya Yamamoto, Erika Bach, Todd Nystul
Genetics. 2017 Jul; 206(3): 1417–1428. Published online 2017 May 16. doi: 10.1534/genetics.117.201202
PMCID:
PMC5500140
AbstractArticlePDF–2.3M
14.
Seizure control through genetic and pharmacological manipulation of Pumilio in Drosophila: a key component of neuronal homeostasis
Wei-Hsiang Lin, Carlo N. G. Giachello, Richard A. Baines
Dis Model Mech. 2017 Feb 1; 10(2): 141–150. doi: 10.1242/dmm.027045
PMCID:
PMC5312004
AbstractArticle
15.
Evolutionary Dynamics of Abundant Stop Codon Readthrough
Irwin Jungreis, Clara S. Chan, Robert M. Waterhouse, Gabriel Fields, Michael F. Lin, Manolis Kellis
Mol Biol Evol. 2016 Dec; 33(12): 3108–3132. Published online 2016 Sep 7. doi: 10.1093/molbev/msw189
PMCID:
PMC5100048
AbstractArticlePDF–3.6M
16.
Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing
Alborz Mazloomian, Irmtraud M Meyer
RNA Biol. 2015 Dec; 12(12): 1391–1401. Published online 2015 Oct 29. doi: 10.1080/15476286.2015.1107703
PMCID:
PMC4829317
AbstractArticlePDF–609K
17.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
18.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
19.
Identification of Genes That Promote or Inhibit Olfactory Memory Formation in Drosophila
Erica Walkinshaw, Yunchao Gai, Caitlin Farkas, Daniel Richter, Eric Nicholas, Krystyna Keleman, Ronald L. Davis
Genetics. 2015 Apr; 199(4): 1173–1182. Published online 2015 Feb 2. doi: 10.1534/genetics.114.173575
PMCID:
PMC4391555
AbstractArticlePDF–1.1M
20.
Evolutionary and Functional Analysis of the Invariant SWIM Domain in the Conserved Shu2/SWS1 Protein Family from Saccharomyces cerevisiae to Homo sapiens
Stephen K. Godin, Camille Meslin, Faiz Kabbinavar, Dominique S. Bratton-Palmer, Christina Hornack, Michael J. Mihalevic, Kyle Yoshida, Meghan Sullivan, Nathan L. Clark, Kara A. Bernstein
Genetics. 2015 Apr; 199(4): 1023–1033. Published online 2015 Feb 5. doi: 10.1534/genetics.114.173518
PMCID:
PMC4391554
AbstractArticlePDF–1.8M

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