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Select item 112031811.

Increased Enhancer—Promoter Interactions during Developmental Enhancer Activation in Mammals

Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J. Mannion, Ana Alcaina-Caro, Javier Lopez-Rios, Diane E. Dickel, Axel Visel, Len A. Pennacchio, Evgeny Z. Kvon

Nat Genet. Author manuscript; available in PMC 2024 Jun 26.

Published in final edited form as: Nat Genet. 2024 Apr; 56(4): 675–685. Published online 2024 Mar 20. doi: 10.1038/s41588-024-01681-2

PMCID:: PMC11203181

Abstract Article PDF–5.6M

Select item 105920582.

Single-nucleus RNA sequencing of developing superior colliculus identifies neuronal diversity and candidate mediators of circuit assembly

James S. Choi, Ana C. Ayupe, Felipe Beckedorff, Paola Catanuto, Robyn McCartan, Konstantin Levay, Kevin K. Park

Cell Rep. Author manuscript; available in PMC 2023 Oct 23.

Published in final edited form as: Cell Rep. 2023 Sep 26; 42(9): 113037. Published online 2023 Aug 24. doi: 10.1016/j.celrep.2023.113037

PMCID:: PMC10592058

Abstract Article PDF–4.5M

Select item 103359373.

Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis

Abhishek Sampath Kumar, Luyi Tian, Adriano Bolondi, Amèlia Aragonés Hernández, Robert Stickels, Helene Kretzmer, Evan Murray, Lars Wittler, Maria Walther, Gabriel Barakat, Leah Haut, Yechiel Elkabetz, Evan Z. Macosko, Léo Guignard, Fei Chen, Alexander Meissner

Nat Genet. 2023; 55(7): 1176–1185. Published online 2023 Jul 6. doi: 10.1038/s41588-023-01435-6

PMCID:: PMC10335937

Abstract Article PDF–25M

Select item 95901634.

PV-IRES-Cre mouse line targets excitatory granule neurons in the cerebellum

Wendy Xueyi Wang, Julia Qiao, Julie L. Lefebvre

Mol Brain. 2022; 15: 85. Published online 2022 Oct 23. doi: 10.1186/s13041-022-00972-1

PMCID:: PMC9590163

Abstract Article PDF–1.3M

Select item 93984535.

Temporal analysis of enhancers during mouse cerebellar development reveals dynamic and novel regulatory functions

Miguel Ramirez, Yuliya Badayeva, Joanna Yeung, Joshua Wu, Ayasha Abdalla-Wyse, Erin Yang, FANTOM 5 Consortium, Brett Trost, Stephen W Scherer, Daniel Goldowitz

eLife. 2022; 11: e74207. Published online 2022 Aug 9. doi: 10.7554/eLife.74207

PMCID:: PMC9398453

Abstract Article PDF–5.5M

Select item 92074136.

The Effects of Maternal Intake of EPA and DHA Enriched Diet During Pregnancy and Lactation on Offspring’s Muscle Development and Energy Homeostasis

Saeed Ghnaimawi, Shilei Zhang, Jamie I. Baum, Yan Huang

Front Physiol. 2022; 13: 881624. Published online 2022 Jun 6. doi: 10.3389/fphys.2022.881624

PMCID:: PMC9207413

Abstract Article PDF–6.0M

Select item 91696517.

Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia

Linda Su-Feher, Anna N. Rubin, Shanni N. Silberberg, Rinaldo Catta-Preta, Kenneth J. Lim, Athena R. Ypsilanti, Iva Zdilar, Christopher S. McGinnis, Gabriel L. McKinsey, Thomas E. Rubino, Jr., Michael J. Hawrylycz, Carol Thompson, Zev J. Gartner, Luis Puelles, Hongkui Zeng, John L. R. Rubenstein, Alex S. Nord

Proc Natl Acad Sci U S A. 2022 Apr 12; 119(15): e2108760119. Published online 2022 Apr 4. doi: 10.1073/pnas.2108760119

PMCID:: PMC9169651

Abstract Article PDF–3.9M

Select item 87137948.

Transcriptional network orchestrating regional patterning of cortical progenitors

Athéna R. Ypsilanti, Kartik Pattabiraman, Rinaldo Catta-Preta, Olga Golonzhka, Susan Lindtner, Ke Tang, Ian R. Jones, Armen Abnousi, Ivan Juric, Ming Hu, Yin Shen, Diane E. Dickel, Axel Visel, Len A. Pennacchio, Michael Hawrylycz, Carol L. Thompson, Hongkui Zeng, Iros Barozzi, Alex S. Nord, John L. Rubenstein

Proc Natl Acad Sci U S A. 2021 Dec 21; 118(51): e2024795118. Published online 2021 Dec 17. doi: 10.1073/pnas.2024795118

PMCID:: PMC8713794

Abstract Article PDF–3.1M

Select item 86946989.

Transcriptional profiling of sequentially generated septal neuron fates

Miguel Turrero García, Sarah K Stegmann, Tiara E Lacey, Christopher M Reid, Sinisa Hrvatin, Caleb Weinreb, Manal A Adam, M Aurel Nagy, Corey C Harwell

eLife. 2021; 10: e71545. Published online 2021 Dec 1. doi: 10.7554/eLife.71545

PMCID:: PMC8694698

Abstract Article PDF–5.1M

Select item 831323910.

Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development

Francesco Bedogni, Robert F. Hevner

Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034

PMCID:: PMC8313239

Abstract Article PDF–1.6M

Select item 829232211.

High-depth spatial transcriptome analysis by photo-isolation chemistry

Mizuki Honda, Shinya Oki, Ryuichi Kimura, Akihito Harada, Kazumitsu Maehara, Kaori Tanaka, Chikara Meno, Yasuyuki Ohkawa

Nat Commun. 2021; 12: 4416. Published online 2021 Jul 20. doi: 10.1038/s41467-021-24691-8

PMCID:: PMC8292322

Abstract Article PDF–2.1M

Select item 799995212.

Meis homeobox genes control progenitor competence in the retina

Naoko Dupacova, Barbora Antosova, Jan Paces, Zbynek Kozmik

Proc Natl Acad Sci U S A. 2021 Mar 23; 118(12): e2013136118. Published online 2021 Mar 15. doi: 10.1073/pnas.2013136118

PMCID:: PMC7999952

Abstract Article PDF–3.1M

Select item 799017913.

Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons

Jia Li, Lei Sun, Xue-Liang Peng, Xiao-Ming Yu, Shao-Jun Qi, Zhi John Lu, Jing-Dong J. Han, Qin Shen

PLoS Genet. 2021 Mar; 17(3): e1009355. Published online 2021 Mar 24. doi: 10.1371/journal.pgen.1009355

PMCID:: PMC7990179

Abstract Article PDF–3.3M

Select item 745911514.

The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development

Dong Won Kim, Parris Whitney Washington, Zoe Qianyi Wang, Sonia Hao Lin, Changyu Sun, Basma Taleb Ismail, Hong Wang, Lizhi Jiang, Seth Blackshaw

Nat Commun. 2020; 11: 4360. Published online 2020 Aug 31. doi: 10.1038/s41467-020-18231-z

Correction in:: Nat Commun. 2022; 13: 332.

PMCID:: PMC7459115

Abstract Article PDF–2.1M

Select item 713225615.

Parcellation of the striatal complex into dorsal and ventral districts

Shih-Yun Chen, Kuan-Ming Lu, Hsin-An Ko, Ting-Hao Huang, Janice Hsin-Jou Hao, Yu-Ting Yan, Sunny Li-Yun Chang, Sylvia M. Evans, Fu-Chin Liu

Proc Natl Acad Sci U S A. 2020 Mar 31; 117(13): 7418–7429. Published online 2020 Mar 13. doi: 10.1073/pnas.1921007117

PMCID:: PMC7132256

Abstract Article PDF–4.5M

Select item 711617516.

Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach

Surangi N. Perera, Ruth M. Williams, Rachel Lyne, Oliver Stubbs, Dennis P. Buehler, Tatjana Sauka-Spengler, Masaharu Noda, Gos Micklem, E. Michelle Southard-Smith, Clare V. H. Baker

Glia. Author manuscript; available in PMC 2020 Dec 1.

Published in final edited form as: Glia. 2020 Dec 1; 68(12): 2550–2584. Published online 2020 Aug 28. doi: 10.1002/glia.23870