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Items: 1 to 20 of 22

1.
Tibial fracture surgery in elderly mice caused postoperative neurocognitive disorder via SOX2OT lncRNA in the hippocampus
Zhibin Xiao, Xiajing Zhang, Guangyao Li, Li Sun, Jiangjing Li, Ziwei Jing, Qingya Qiu, Guangxiang He, Changjun Gao, Xude Sun
Mol Brain. 2023; 16: 36. Published online 2023 Apr 25. doi: 10.1186/s13041-023-01024-y
PMCID:
PMC10131420
AbstractArticlePDF–8.3M
2.
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development
Francesco Bedogni, Robert F. Hevner
Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034
PMCID:
PMC8313239
AbstractArticlePDF–1.6M
3.
LncRNA SOX2OT alleviates mesangial cell proliferation and fibrosis in diabetic nephropathy via Akt/mTOR-mediated autophagy
Ke Chen, Bo Yu, Jie Liao
Mol Med. 2021; 27: 71. Published online 2021 Jul 8. doi: 10.1186/s10020-021-00310-6
PMCID:
PMC8268185
AbstractArticlePDF–15M
4.
Sox2-Evf2 lncRNA-mediated mechanisms of chromosome topological control in developing forebrain
Ivelisse Cajigas, Abhijit Chakraborty, Madison Lynam, Kelsey R. Swyter, Monique Bastidas, Linden Collens, Hao Luo, Ferhat Ay, Jhumku D. Kohtz
Development. 2021 Mar 15; 148(6): dev197202. Published online 2021 Mar 15. doi: 10.1242/dev.197202
PMCID:
PMC7990859
AbstractArticle
5.
Knockdown of long non-coding RNA SOX2OT downregulates SOX2 to improve hippocampal neurogenesis and cognitive function in a mouse model of sepsis-associated encephalopathy
Jialin Yin, Yanan Shen, Yanna Si, Yuan Zhang, Jiayue Du, Xiajuan Hu, Mengmeng Cai, Hongguang Bao, Yan Xing
J Neuroinflammation. 2020; 17: 320. Published online 2020 Oct 25. doi: 10.1186/s12974-020-01970-7
PMCID:
PMC7586681
AbstractArticlePDF–7.0M
6.
LncRNA Sox2ot modulates the progression of thoracic aortic aneurysm by regulating miR-330-5p/Myh11
Weizhang Xiao, Xing Li, Cheng Ji, Jiahai Shi, Youmin Pan
Biosci Rep. 2020 Jul 31; 40(7): BSR20194040. Published online 2020 Jul 15. doi: 10.1042/BSR20194040
PMCID:
PMC7364482
AbstractArticlePDF–1.8M
7.
Long noncoding RNA Sox2ot and transcription factor YY1 co-regulate the differentiation of cortical neural progenitors by repressing Sox2
Jennifer L. Knauss, Nan Miao, Seung-Nam Kim, Yanzhen Nie, Yuelin Shi, Tao Wu, Hugo Borges Pinto, Mary E. Donohoe, Tao Sun
Cell Death Dis. 2018 Aug; 9(8): 799. Published online 2018 Jul 23. doi: 10.1038/s41419-018-0840-2
PMCID:
PMC6056501
AbstractArticlePDF–4.1M
8.
Allele-specific repression of Sox2 through the long non-coding RNA Sox2ot
Tobias C. Messemaker, Selina M. van Leeuwen, Patrick R. van den Berg, Anke E. J. ‘t Jong, Robert-Jan Palstra, Rob C. Hoeben, Stefan Semrau, Harald M. M. Mikkers
Sci Rep. 2018; 8: 386. Published online 2018 Jan 10. doi: 10.1038/s41598-017-18649-4
PMCID:
PMC5762901
AbstractArticlePDF–1.8M
9.
Transcriptional role of androgen receptor in the expression of long non-coding RNA Sox2OT in neurogenesis
Valentina Tosetti, Jenny Sassone, Anna L. M. Ferri, Michela Taiana, Gloria Bedini, Sara Nava, Greta Brenna, Chiara Di Resta, Davide Pareyson, Anna Maria Di Giulio, Stephana Carelli, Eugenio A. Parati, Alfredo Gorio
PLoS One. 2017; 12(7): e0180579. Published online 2017 Jul 12. doi: 10.1371/journal.pone.0180579
PMCID:
PMC5507538
AbstractArticlePDF–6.3M
10.
Emerging Role of Long Non-Coding RNA SOX2OT in SOX2 Regulation in Breast Cancer
Marjan E. Askarian-Amiri, Vahid Seyfoddin, Chanel E. Smart, Jingli Wang, Ji Eun Kim, Herah Hansji, Bruce C. Baguley, Graeme J. Finlay, Euphemia Y. Leung
PLoS One. 2014; 9(7): e102140. Published online 2014 Jul 9. doi: 10.1371/journal.pone.0102140
PMCID:
PMC4090206
AbstractArticlePDF–908K
11.
The Vertebrate Genome Annotation browser 10 years on
Jennifer L. Harrow, Charles A. Steward, Adam Frankish, James G. Gilbert, Jose M. Gonzalez, Jane E. Loveland, Jonathan Mudge, Dan Sheppard, Mark Thomas, Stephen Trevanion, Laurens G. Wilming
Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D771–D779. Published online 2013 Dec 6. doi: 10.1093/nar/gkt1241
PMCID:
PMC3964964
AbstractArticlePDF–11M
12.
Multiple knockout mouse models reveal lincRNAs are required for life and brain development
Martin Sauvageau, Loyal A Goff, Simona Lodato, Boyan Bonev, Abigail F Groff, Chiara Gerhardinger, Diana B Sanchez-Gomez, Ezgi Hacisuleyman, Eric Li, Matthew Spence, Stephen C Liapis, William Mallard, Michael Morse, Mavis R Swerdel, Michael F D’Ecclessis, Jennifer C Moore, Venus Lai, Guochun Gong, George D Yancopoulos, David Frendewey, Manolis Kellis, Ronald P Hart, David M Valenzuela, Paola Arlotta, John L Rinn
eLife. 2013; 2: e01749. Published online 2013 Dec 31. doi: 10.7554/eLife.01749
PMCID:
PMC3874104
AbstractArticlePDF–4.6M
13.
Application of a Novel Strategy of Engineering Conditional Alleles to a Single Exon Gene, Sox2
Nikolaos Mandalos, Marannia Saridaki, Jessica Lea Harper, Anastasia Kotsoni, Peter Yang, Aris N. Economides, Eumorphia Remboutsika
PLoS One. 2012; 7(9): e45768. Published online 2012 Sep 27. doi: 10.1371/journal.pone.0045768
PMCID:
PMC3459942
AbstractArticlePDF–1.2M
14.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
15.
Complex architecture and regulated expression of the Sox2ot locus during vertebrate development
Paulo P. Amaral, Christine Neyt, Simon J. Wilkins, Marjan E. Askarian-Amiri, Susan M. Sunkin, Andrew C. Perkins, John S. Mattick
RNA. 2009 Nov; 15(11): 2013–2027. doi: 10.1261/rna.1705309
PMCID:
PMC2764477
AbstractArticlePDF–1.0M
16.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K
20.
A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome
Jens Hansen, Thomas Floss, Petra Van Sloun, Ernst-Martin Füchtbauer, Franz Vauti, Hans-Hennig Arnold, Frank Schnütgen, Wolfgang Wurst, Harald von Melchner, Patricia Ruiz
Proc Natl Acad Sci U S A. 2003 Aug 19; 100(17): 9918–9922. Published online 2003 Aug 6. doi: 10.1073/pnas.1633296100
PMCID:
PMC187885
AbstractArticlePDF–287K

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