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Items: 1 to 20 of 24

1.
Increased Enhancer—Promoter Interactions during Developmental Enhancer Activation in Mammals
Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J. Mannion, Ana Alcaina-Caro, Javier Lopez-Rios, Diane E. Dickel, Axel Visel, Len A. Pennacchio, Evgeny Z. Kvon
Nat Genet. Author manuscript; available in PMC 2024 Jun 26.
Published in final edited form as: Nat Genet. 2024 Apr; 56(4): 675–685. Published online 2024 Mar 20. doi: 10.1038/s41588-024-01681-2
PMCID:
PMC11203181
AbstractArticlePDF–5.6M
2.
Developmental deficits of MGE-derived interneurons in the Cntnap2 knockout mouse model of autism spectrum disorder
Noorya Yasmin Ahmed, Rhys Knowles, Lixinyu Liu, Yiming Yan, Xiaohan Li, Ulrike Schumann, Yumeng Wang, Yovina Sontani, Nathan Reynolds, Riccardo Natoli, Jiayu Wen, Isabel Del Pino, Da Mi, Nathalie Dehorter
Front Cell Dev Biol. 2023; 11: 1112062. Published online 2023 Feb 1. doi: 10.3389/fcell.2023.1112062
PMCID:
PMC9930104
AbstractArticlePDF–3.5M
3.
High-depth spatial transcriptome analysis by photo-isolation chemistry
Mizuki Honda, Shinya Oki, Ryuichi Kimura, Akihito Harada, Kazumitsu Maehara, Kaori Tanaka, Chikara Meno, Yasuyuki Ohkawa
Nat Commun. 2021; 12: 4416. Published online 2021 Jul 20. doi: 10.1038/s41467-021-24691-8
PMCID:
PMC8292322
AbstractArticlePDF–2.1M
4.
Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach
Surangi N. Perera, Ruth M. Williams, Rachel Lyne, Oliver Stubbs, Dennis P. Buehler, Tatjana Sauka-Spengler, Masaharu Noda, Gos Micklem, E. Michelle Southard-Smith, Clare V. H. Baker
Glia. Author manuscript; available in PMC 2020 Dec 1.
Published in final edited form as: Glia. 2020 Dec 1; 68(12): 2550–2584. Published online 2020 Aug 28. doi: 10.1002/glia.23870
PMCID:
PMC7116175
AbstractArticlePDF–8.9M
5.
Molecular patterning of the embryonic cranial mesenchyme revealed by genome-wide transcriptional profiling
Krishnakali Dasgupta, Jong Uk Chung, Kesava Asam, Juhee Jeong
Dev Biol. Author manuscript; available in PMC 2020 Nov 15.
Published in final edited form as: Dev Biol. 2019 Nov 15; 455(2): 434–448. Published online 2019 Jul 24. doi: 10.1016/j.ydbio.2019.07.015
PMCID:
PMC6842427
AbstractArticlePDF–6.1M
6.
Sox2 Acts in Thalamic Neurons to Control the Development of Retina-Thalamus-Cortex Connectivity
Sara Mercurio, Linda Serra, Alessia Motta, Lorenzo Gesuita, Luisa Sanchez-Arrones, Francesca Inverardi, Benedetta Foglio, Cristiana Barone, Polynikis Kaimakis, Ben Martynoga, Sergio Ottolenghi, Michèle Studer, Francois Guillemot, Carolina Frassoni, Paola Bovolenta, Silvia K. Nicolis
iScience. 2019 May 31; 15: 257–273. Published online 2019 Apr 26. doi: 10.1016/j.isci.2019.04.030
PMCID:
PMC6517317
AbstractArticlePDF–17M
7.
Zic4-Lineage Cells Increase Their Contribution to Visual Thalamic Nuclei during Murine Embryogenesis If They Are Homozygous or Heterozygous for Loss of Pax6 Function
Ziwen Li, Thomas Pratt, David J. Price
eNeuro. 2018 Sep-Oct; 5(5): ENEURO.0367-18.2018. Prepublished online 2018 Oct 9. Published online 2018 Oct 23. doi: 10.1523/ENEURO.0367-18.2018
PMCID:
PMC6220585
AbstractArticlePDF–14M
8.
NKX2-1 Is Required in the Embryonic Septum for Cholinergic System Development, Learning, and Memory
Lorenza Magno, Caswell Barry, Christoph Schmidt-Hieber, Polyvios Theodotou, Michael Häusser, Nicoletta Kessaris
Cell Rep. 2017 Aug 15; 20(7): 1572–1584. Published online 2017 Aug 15. doi: 10.1016/j.celrep.2017.07.053
PMCID:
PMC5565637
AbstractArticlePDF–6.5M
9.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
10.
The Role of Zic Genes in Inner Ear Development in the Mouse: Exploring Mutant Mouse Phenotypes
Andrew P. Chervenak, Lisa M. Bank, Nicole Thomsen, Hannah C Glanville-Jones, Jonathan Skibo, Kathleen J. Millen, Ruth M. Arkell, Kate F. Barald
Dev Dyn. Author manuscript; available in PMC 2015 Nov 1.
Published in final edited form as: Dev Dyn. 2014 Nov; 243(11): 1487–1498. Published online 2014 Sep 16. doi: 10.1002/dvdy.24186
PMCID:
PMC4206579
AbstractArticlePDF–3.4M
11.
Spatiotemporal Expression of Zic Genes During Vertebrate Inner Ear Development
Andrew P. Chervenak, Ibrahim Hakim, Kate F. Barald
Dev Dyn. Author manuscript; available in PMC 2014 Jul 1.
Published in final edited form as: Dev Dyn. 2013 Jul; 242(7): 897–908. Published online 2013 May 30. doi: 10.1002/dvdy.23978
PMCID:
PMC3771324
AbstractArticlePDF–7.4M
12.
If the skull fits: magnetic resonance imaging and microcomputed tomography for combined analysis of brain and skull phenotypes in the mouse
Brian J. Nieman, Marissa C. Blank, Brian B. Roman, R. Mark Henkelman, Kathleen J. Millen
Physiol Genomics. 2012 Oct 15; 44(20): 992–1002. Published online 2012 Sep 4. doi: 10.1152/physiolgenomics.00093.2012
PMCID:
PMC3472465
AbstractArticle
13.
A Genome-Wide Screen to Identify Transcription Factors Expressed in Pelvic Ganglia of the Lower Urinary Tract
Carrie B. Wiese, Sara Ireland, Nicole L. Fleming, Jing Yu, M. Todd Valerius, Kylie Georgas, Han Sheng Chiu, Jane Brennan, Jane Armstrong, Melissa H. Little, Andrew P. McMahon, E. Michelle Southard-Smith
Front Neurosci. 2012; 6: 130. Published online 2012 Sep 12. doi: 10.3389/fnins.2012.00130
PMCID:
PMC3439845
AbstractArticlePDF–1.4M
14.
Differential Gene Expression in the Developing Lateral Geniculate Nucleus and Medial Geniculate Nucleus Reveals Novel Roles for Zic4 and Foxp2 in Visual and Auditory Pathway Development
Sam Horng, Gabriel Kreiman, Charlene Ellsworth, Damon Page, Marissa Blank, Kathleen Millen, Mriganka Sur
J Neurosci. 2009 Oct 28; 29(43): 13672–13683. doi: 10.1523/JNEUROSCI.2127-09.2009
PMCID:
PMC3395072
AbstractArticlePDF–2.1M
15.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
16.
Development, Maturation, and Necessity of Transcription Factors in the Mouse Suprachiasmatic Nucleus
Cassandra VanDunk, Lindsay A. Hunter, Paul A. Gray
J Neurosci. 2011 Apr 27; 31(17): 6457–6467. doi: 10.1523/JNEUROSCI.5385-10.2011
PMCID:
PMC3106226
AbstractArticlePDF–5.9M
17.
The Germinal Zones of the Basal Ganglia But Not the Septum Generate GABAergic Interneurons for the Cortex
Anna N. Rubin, Fabienne Alfonsi, Michael P. Humphreys, Christina K. P. Choi, Susana F. Rocha, Nicoletta Kessaris
J Neurosci. 2010 Sep 8; 30(36): 12050–12062. doi: 10.1523/JNEUROSCI.6178-09.2010
PMCID:
PMC3044873
AbstractArticlePDF–8.1M
18.
Multiple developmental programs are altered by loss of Zic1 and Zic4 to cause Dandy-Walker malformation cerebellar pathogenesis
Marissa C. Blank, Inessa Grinberg, Emmanuel Aryee, Christine Laliberte, Victor V. Chizhikov, R. Mark Henkelman, Kathleen J. Millen
Development. 2011 Mar 15; 138(6): 1207–1216. doi: 10.1242/dev.054114
PMCID:
PMC3042874
AbstractArticle
19.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
20.
BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System
Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran
PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086
PMCID:
PMC1413568
ArticlePDF–99K

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