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Items: 1 to 20 of 21

1.
Loss of Hs3st3a1 or Hs3st3b1 enzymes alters heparan sulfate to reduce epithelial morphogenesis and adult salivary gland function
Vaishali N. Patel, Dallas L. Pineda, Elsa Berenstein, Belinda R. Hauser, Sophie Choi, Michaela Prochazkova, Changyu Zheng, Corinne M. Goldsmith, Toin H. van Kuppevelt, Ashok Kulkarni, Yuefan Song, Robert J. Linhardt, Alejandro M. Chibly, Matthew P. Hoffman
Matrix Biol. Author manuscript; available in PMC 2022 Oct 12.
Published in final edited form as: Matrix Biol. 2021 Sep; 103-104: 37–57. Published online 2021 Oct 12. doi: 10.1016/j.matbio.2021.10.002
PMCID:
PMC8629026
AbstractArticlePDF–2.7M
2.
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development
Francesco Bedogni, Robert F. Hevner
Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034
PMCID:
PMC8313239
AbstractArticlePDF–1.6M
3.
A mutant cell library for systematic analysis of heparan sulfate structure-function relationships
Hong Qiu, Songshan Shi, Jingwen Yue, Meng Xin, Alison V Nairn, Lei Lin, Xinyue Liu, Guoyun Li, Stephanie A Archer-Hartmann, Mitche Dela Rosa, Melina Galizzi, Shunchun Wang, Fuming Zhang, Parastoo Azadi, Toin H. van Kuppevelt, Wellington V. Cardoso, Koji Kimata, Xingbin Ai, Kelley W Moremen, Jeffrey D. Esko, Robert J. Linhardt, Lianchun Wang
Nat Methods. Author manuscript; available in PMC 2019 Apr 30.
Published in final edited form as: Nat Methods. 2018 Nov; 15(11): 889–899. Published online 2018 Oct 30. doi: 10.1038/s41592-018-0189-6
PMCID:
PMC6214364
AbstractArticlePDF–1.8M
4.
Dynamic Expression of Genes Involved in Proteoglycan/Glycosaminoglycan Metabolism during Skin Development
P. J. E. Uijtdewilligen, E. M. Versteeg, E. M. A. van de Westerlo, J. van der Vlag, W. F. Daamen, T. H. van Kuppevelt
Biomed Res Int. 2018; 2018: 9873471. Published online 2018 Aug 29. doi: 10.1155/2018/9873471
PMCID:
PMC6136507
AbstractArticlePDF–838K
5.
HS3ST1 Genotype Regulates Antithrombin’s Inflammomodulatory Tone and Associates with Atherosclerosis
Nicole C. Smits, Takashi Kobayashi, Pratyaksh K. Srivastava, Sladjana Skopelja, Julianne A. Ivy, Dustin J. Elwood, Radu V. Stan, Gregory J. Tsongalis, Frank W. Sellke, Peter L. Gross, Michael D. Cole, James T. DeVries, Aaron V. Kaplan, John F. Robb, Scott M. Williams, Nicholas W. Shworak
Matrix Biol. Author manuscript; available in PMC 2018 Nov 1.
Published in final edited form as: Matrix Biol. 2017 Nov; 63: 69–90. Published online 2017 Jan 23. doi: 10.1016/j.matbio.2017.01.003
PMCID:
PMC5532081
AbstractArticlePDF–2.0M
6.
Tissue-Specific Gain of RTK Signalling Uncovers Selective Cell Vulnerability during Embryogenesis
Yannan Fan, Sylvie Richelme, Emilie Avazeri, Stéphane Audebert, Françoise Helmbacher, Rosanna Dono, Flavio Maina
PLoS Genet. 2015 Sep; 11(9): e1005533. Published online 2015 Sep 22. doi: 10.1371/journal.pgen.1005533
PMCID:
PMC4579069
AbstractArticlePDF–24M
7.
Bioengineering murine mastocytoma cells to produce anticoagulant heparin
Leyla Gasimli, Charles A Glass, Payel Datta, Bo Yang, Guoyun Li, Trent R Gemmill, Jong Youn Baik, Susan T Sharfstein, Jeffrey D Esko, Robert J Linhardt
Glycobiology. 2014 Mar; 24(3): 272–280. Published online 2013 Dec 9. doi: 10.1093/glycob/cwt108
PMCID:
PMC3919470
AbstractArticlePDF–450K
8.
Bioengineered Chinese Hamster Ovary Cells with Golgi-targeted 3-O-Sulfotransferase-1 Biosynthesize Heparan Sulfate with an Antithrombin-binding Site
Payel Datta, Guoyun Li, Bo Yang, Xue Zhao, Jong Youn Baik, Trent R. Gemmill, Susan T. Sharfstein, Robert J. Linhardt
J Biol Chem. 2013 Dec 27; 288(52): 37308–37318. Published online 2013 Nov 18. doi: 10.1074/jbc.M113.519033
PMCID:
PMC3873583
AbstractArticlePDF–2.4M
9.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
12.
Ezh2, the histone methyltransferase of PRC2, regulates the balance between self-renewal and differentiation in the cerebral cortex
João D. Pereira, Stephen N. Sansom, James Smith, Marc-Werner Dobenecker, Alexander Tarakhovsky, Frederick J. Livesey
Proc Natl Acad Sci U S A. 2010 Sep 7; 107(36): 15957–15962. Published online 2010 Aug 23. doi: 10.1073/pnas.1002530107
PMCID:
PMC2936600
AbstractArticlePDF–1.8M
13.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
14.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
15.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
16.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
17.
GenePaint.org: an atlas of gene expression patterns in the mouse embryo
Axel Visel, Christina Thaller, Gregor Eichele
Nucleic Acids Res. 2004 Jan 1; 32(Database issue): D552–D556. doi: 10.1093/nar/gkh029
PMCID:
PMC308763
AbstractArticlePDF–253K
18.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K
19.
Normal levels of anticoagulant heparan sulfate are not essential for normal hemostasis
Sassan HajMohammadi, Keiichi Enjyoji, Marc Princivalle, Patricia Christi, Miroslav Lech, David Beeler, Helen Rayburn, John J. Schwartz, Samad Barzegar, Ariane I. de Agostini, Mark J. Post, Robert D. Rosenberg, Nicholas W. Shworak
J Clin Invest. 2003 Apr 1; 111(7): 989–999. doi: 10.1172/JCI15809
PMCID:
PMC152578
AbstractArticlePDF–763K
20.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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