PMC Links for GEO Profiles (Select 66449952) - PMC

Select item 84065351.

A comprehensive series of Irx cluster mutants reveals diverse roles in facial cartilage development

D'Juan T. Farmer, Punam Patel, Rachelle Choi, Chih-Yu Liu, J. Gage Crump

Development. 2021 Aug 15; 148(16): dev197244. Published online 2021 Aug 16. doi: 10.1242/dev.197244

PMCID:: PMC8406535

Abstract Article

Select item 82599872.

Multiple morphogens and rapid elongation promote segmental patterning during development

Yuchi Qiu, Lianna Fung, Thomas F. Schilling, Qing Nie

PLoS Comput Biol. 2021 Jun; 17(6): e1009077. Published online 2021 Jun 23. doi: 10.1371/journal.pcbi.1009077

PMCID:: PMC8259987

Abstract Article PDF–5.7M

Select item 60203133.

Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh, Jennifer M. Maurer, Charles G. Sagerström

Neural Dev. 2018; 13: 13. Published online 2018 Jun 26. doi: 10.1186/s13064-018-0112-y

PMCID:: PMC6020313

Abstract Article PDF–3.5M

Select item 55928154.

Genome-wide analysis of facial skeletal regionalization in zebrafish

Amjad Askary, Pengfei Xu, Lindsey Barske, Maxwell Bay, Paul Bump, Bartosz Balczerski, Michael A. Bonaguidi, J. Gage Crump

Development. 2017 Aug 15; 144(16): 2994–3005. doi: 10.1242/dev.151712

PMCID:: PMC5592815

Abstract Article

Select item 54512135.

Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos

Shai R Joseph, Máté Pálfy, Lennart Hilbert, Mukesh Kumar, Jens Karschau, Vasily Zaburdaev, Andrej Shevchenko, Nadine L Vastenhouw

eLife. 2017; 6: e23326. Published online 2017 Apr 20. doi: 10.7554/eLife.23326

PMCID:: PMC5451213

Abstract Article PDF–2.3M

Select item 54279556.

Retinoic Acid Receptor Subtype-Specific Transcriptotypes in the Early Zebrafish Embryo

Eric Samarut, Cyril Gaudin, Sandrine Hughes, Benjamin Gillet, Simon de Bernard, Pierre-Emmanuel Jouve, Laurent Buffat, Alexis Allot, Odile Lecompte, Liubov Berekelya, Cécile Rochette-Egly, Vincent Laudet

Mol Endocrinol. 2014 Feb; 28(2): 260–272. Published online 2014 Jan 8. doi: 10.1210/me.2013-1358

PMCID:: PMC5427955

Abstract Article

Select item 47588197.

Iroquois proteins promote skeletal joint formation by maintaining chondrocytes in an immature state

Amjad Askary, Lindsey Mork, Sandeep Paul, Xinjun He, Audrey K. Izuhara, Suhasni Gopalakrishnan, Justin K. Ichida, Andrew P. McMahon, Sonja Dabizljevic, Rodney Dale, Francesca V. Mariani, J. Gage Crump

Dev Cell. Author manuscript; available in PMC 2016 Nov 9.

Published in final edited form as: Dev Cell. 2015 Nov 9; 35(3): 358–365. doi: 10.1016/j.devcel.2015.10.004

PMCID:: PMC4758819

Abstract Article PDF–2.5M

Select item 46341378.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 44303699.

Spatial reconstruction of single-cell gene expression

Rahul Satija, Jeffrey A. Farrell, David Gennert, Alexander F. Schier, Aviv Regev

Nat Biotechnol. Author manuscript; available in PMC 2015 Nov 1.

Published in final edited form as: Nat Biotechnol. 2015 May; 33(5): 495–502. Published online 2015 Apr 13. doi: 10.1038/nbt.3192

PMCID:: PMC4430369

Abstract Article PDF–849K

Select item 381431410.

Genome Wide Analysis Reveals Zic3 Interaction with Distal Regulatory Elements of Stage Specific Developmental Genes in Zebrafish

Cecilia L. Winata, Igor Kondrychyn, Vibhor Kumar, Kandhadayar G. Srinivasan, Yuriy Orlov, Ashwini Ravishankar, Shyam Prabhakar, Lawrence W. Stanton, Vladimir Korzh, Sinnakaruppan Mathavan

PLoS Genet. 2013 Oct; 9(10): e1003852. Published online 2013 Oct 31. doi: 10.1371/journal.pgen.1003852

PMCID:: PMC3814314

Abstract Article PDF–6.2M

Select item 363311011.

Analysis of the African coelacanth genome sheds light on tetrapod evolution

Chris T. Amemiya, Jessica Alföldi, Alison P. Lee, Shaohua Fan, Hervé Philippe, Iain MacCallum, Ingo Braasch, Tereza Manousaki, Igor Schneider, Nicolas Rohner, Chris Organ, Domitille Chalopin, Jeramiah J. Smith, Mark Robinson, Rosemary A. Dorrington, Marco Gerdol, Bronwen Aken, Maria Assunta Biscotti, Marco Barucca, Denis Baurain, Aaron M. Berlin, Gregory L. Blatch, Francesco Buonocore, Thorsten Burmester, Michael S. Campbell, Adriana Canapa, John P. Cannon, Alan Christoffels, Gianluca De Moro, Adrienne L. Edkins, Lin Fan, Anna Maria Fausto, Nathalie Feiner, Mariko Forconi, Junaid Gamieldien, Sante Gnerre, Andreas Gnirke, Jared V. Goldstone, Wilfried Haerty, Mark E. Hahn, Uljana Hesse, Steve Hoffmann, Jeremy Johnson, Sibel I. Karchner, Shigehiro Kuraku, Marcia Lara, Joshua Z. Levin, Gary W. Litman, Evan Mauceli, Tsutomu Miyake, M. Gail Mueller, David R. Nelson, Anne Nitsche, Ettore Olmo, Tatsuya Ota, Alberto Pallavicini, Sumir Panji, Barbara Picone, Chris P. Ponting, Sonja J. Prohaska, Dariusz Przybylski, Nil Ratan Saha, Vydianathan Ravi, Filipe J. Ribeiro, Tatjana Sauka-Spengler, Giuseppe Scapigliati, Stephen M. J. Searle, Ted Sharpe, Oleg Simakov, Peter F. Stadler, John J. Stegeman, Kenta Sumiyama, Diana Tabbaa, Hakim Tafer, Jason Turner-Maier, Peter van Heusden, Simon White, Louise Williams, Mark Yandell, Henner Brinkmann, Jean-Nicolas Volff, Clifford J. Tabin, Neil Shubin, Manfred Schartl, David Jaffe, John H. Postlethwait, Byrappa Venkatesh, Federica Di Palma, Eric S. Lander, Axel Meyer, Kerstin Lindblad-Toh

Nature. Author manuscript; available in PMC 2013 Oct 18.

Published in final edited form as: Nature. 2013 Apr 18; 496(7445): 311–316. doi: 10.1038/nature12027