PMC Links for GEO Profiles (Select 6333664) - PMC

Select item 79387701.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 75829982.

The Role of α₁-Microglobulin (A1M) in Erythropoiesis and Erythrocyte Homeostasis—Therapeutic Opportunities in Hemolytic Conditions

Amanda Kristiansson, Magnus Gram, Johan Flygare, Stefan R. Hansson, Bo Åkerström, Jill R. Storry

Int J Mol Sci. 2020 Oct; 21(19): 7234. Published online 2020 Sep 30. doi: 10.3390/ijms21197234

PMCID:: PMC7582998

Abstract Article PDF–2.8M

Select item 69112043.

Galnt11 regulates kidney function by glycosylating the endocytosis receptor megalin to modulate ligand binding

E. Tian, Shengjun Wang, Liping Zhang, Ying Zhang, May C. Malicdan, Yang Mao, Christina Christoffersen, Lawrence A. Tabak, Katrine T. Schjoldager, Kelly G. Ten Hagen

Proc Natl Acad Sci U S A. 2019 Dec 10; 116(50): 25196–25202. Published online 2019 Nov 18. doi: 10.1073/pnas.1909573116

PMCID:: PMC6911204

Abstract Article PDF–1.7M

Select item 63817134.

Update on the human and mouse lipocalin (LCN) gene family, including evidence the mouse Mup cluster is result of an “evolutionary bloom”

Georgia Charkoftaki, Yewei Wang, Monica McAndrews, Elspeth A. Bruford, David C. Thompson, Vasilis Vasiliou, Daniel W. Nebert

Hum Genomics. 2019; 13: 11. Published online 2019 Feb 19. doi: 10.1186/s40246-019-0191-9

PMCID:: PMC6381713

Abstract Article PDF–1.0M

Select item 63283415.

Inter-α-inhibitor deficiency in the mouse is associated with alterations in anxiety-like behavior, exploration, and social approach

David R. Goulding, Viktoriya D. Nikolova, Lopa Mishra, Lisheng Zhuo, Koji Kimata, Sandra J. McBride, Sheryl S. Moy, G. Jean Harry, Stavros Garantziotis

Genes Brain Behav. Author manuscript; available in PMC 2019 Jan 22.

Published in final edited form as: Genes Brain Behav. 2019 Jan; 18(1): e12505. Published online 2018 Aug 6. doi: 10.1111/gbb.12505

PMCID:: PMC6328341

Abstract Article PDF–693K

Select item 62331796.

Hepatokine α1-Microglobulin Signaling Exacerbates Inflammation and Disturbs Fibrotic Repair in Mouse Myocardial Infarction

Daihiko Hakuno, Masahiro Kimura, Shinji Ito, Junko Satoh, Yasuhiro Nakashima, Takahiro Horie, Yasuhide Kuwabara, Masataka Nishiga, Yuya Ide, Osamu Baba, Hitoo Nishi, Tetsushi Nakao, Tomohiro Nishino, Fumiko Nakazeki, Satoshi Koyama, Ritsuko Hanada, Ruiz R. Randolph, Jin Endo, Takeshi Kimura, Koh Ono

Sci Rep. 2018; 8: 16749. Published online 2018 Nov 13. doi: 10.1038/s41598-018-35194-w

PMCID:: PMC6233179

Abstract Article PDF–9.0M

Select item 62071947.

Midgut laterality is driven by hyaluronan on the right

Aravind Sivakumar, Aparna Mahadevan, Mark E. Lauer, Ricky J. Narvaez, Siddesh Ramesh, Cora M. Demler, Nathan R. Souchet, Vincent C. Hascall, Ron J. Midura, Stavros Garantziotis, David B. Frank, Koji Kimata, Natasza A. Kurpios

Dev Cell. Author manuscript; available in PMC 2019 Sep 10.

Published in final edited form as: Dev Cell. 2018 Sep 10; 46(5): 533–551.e5. Published online 2018 Aug 30. doi: 10.1016/j.devcel.2018.08.002

PMCID:: PMC6207194

Abstract Article PDF–2.1M

Select item 53945348.

Neurodevelopmental Changes in Excitatory Synaptic Structure and Function in the Cerebral Cortex of Sanfilippo Syndrome IIIA Mice

Chrissa A. Dwyer, Samantha L. Scudder, Ying Lin, Lara E. Dozier, Dustin Phan, Nicola J. Allen, Gentry N. Patrick, Jeffrey D. Esko

Sci Rep. 2017; 7: 46576. Published online 2017 Apr 18. doi: 10.1038/srep46576

PMCID:: PMC5394534

Abstract Article PDF–1.6M

Select item 48385439.

Expression and localization of Inter-alpha Inhibitors in rodent brain

Xiaodi Chen, Leah Rivard, Syed Naqvi, Sakura Nakada, James F. Padbury, Juan Sanchez-Esteban, Edward G. Stopa, Yow-Pin Lim, Barbara S. Stonestreet

Neuroscience. Author manuscript; available in PMC 2017 Jun 2.

Published in final edited form as: Neuroscience. 2016 Jun 2; 324: 69–81. Published online 2016 Mar 8. doi: 10.1016/j.neuroscience.2016.03.009

PMCID:: PMC4838543

Abstract Article PDF–1.6M

Select item 332257210.

The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices

Alexandra Naba, Karl R. Clauser, Sebastian Hoersch, Hui Liu, Steven A. Carr, Richard O. Hynes

Mol Cell Proteomics. 2012 Apr; 11(4): M111.014647. Published online 2011 Dec 9. doi: 10.1074/mcp.M111.014647

PMCID:: PMC3322572

Abstract Article PDF–7.3M

Select item 317805911.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 304626012.

Identification of Anchor Genes during Kidney Development Defines Ontological Relationships, Molecular Subcompartments and Regulatory Pathways

Rathi D. Thiagarajan, Kylie M. Georgas, Bree A. Rumballe, Emmanuelle Lesieur, Han Sheng Chiu, Darrin Taylor, Dave T. P. Tang, Sean M. Grimmond, Melissa H. Little

PLoS One. 2011; 6(2): e17286. Published online 2011 Feb 28. doi: 10.1371/journal.pone.0017286

PMCID:: PMC3046260

Abstract Article PDF–982K

Select item 302253413.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 267013614.

Hyaluronan Mediates Ozone-induced Airway Hyperresponsiveness in Mice

Stavros Garantziotis, Zhuowei Li, Erin N. Potts, Koji Kimata, Lisheng Zhuo, Daniel L. Morgan, Rashmin C. Savani, Paul W. Noble, W. Michael Foster, David A. Schwartz, John W. Hollingsworth

J Biol Chem. 2009 Apr 24; 284(17): 11309–11317. doi: 10.1074/jbc.M802400200

Correction in:: J Biol Chem. 2016 Sep 9; 291(37): 19257–19258.

PMCID:: PMC2670136

Abstract Article PDF–910K

Select item 248143115.

Identification of transcripts with enriched expression in the developing and adult pancreas

Brad G Hoffman, Bogard Zavaglia, Joy Witzsche, Teresa Ruiz de Algara, Mike Beach, Pamela A Hoodless, Steven JM Jones, Marco A Marra, Cheryl D Helgason

Genome Biol. 2008; 9(6): R99. Published online 2008 Jun 14. doi: 10.1186/gb-2008-9-6-r99

PMCID:: PMC2481431

Abstract Article PDF–2.2M

Select item 141356816.

BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran

PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086

PMCID:: PMC1413568

Article PDF–99K

Select item 113765817.

Developmentally regulated transcription of the four liver-specific genes for inter-alpha-inhibitor family in mouse.

J P Salier, P Chan, G Raguenez, T Zwingman, R P Erickson

Biochem J. 1993 Nov 15; 296(Pt 1): 85–91. doi: 10.1042/bj2960085

PMCID:: PMC1137658

Summary Page Browse PDF–1.8M

Select item 31099218.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098019.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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