PMC Links for GEO Profiles (Select 62658144) - PMC

Select item 108865641.

The Osteoblast Transcriptome in Developing Zebrafish Reveals Key Roles for Extracellular Matrix Proteins Col10a1a and Fbln1 in Skeletal Development and Homeostasis

Ratish Raman, Mishal Antony, Renaud Nivelle, Arnaud Lavergne, Jérémie Zappia, Gustavo Guerrero-Limón, Caroline Caetano da Silva, Priyanka Kumari, Jerry Maria Sojan, Christian Degueldre, Mohamed Ali Bahri, Agnes Ostertag, Corinne Collet, Martine Cohen-Solal, Alain Plenevaux, Yves Henrotin, Jörg Renn, Marc Muller

Biomolecules. 2024 Feb; 14(2): 139. Published online 2024 Jan 23. doi: 10.3390/biom14020139

PMCID:: PMC10886564

Article PDF–4.4M

Select item 106030942.

Small leucine-rich proteoglycans inhibit CNS regeneration by modifying the structural and mechanical properties of the lesion environment

Julia Kolb, Vasiliki Tsata, Nora John, Kyoohyun Kim, Conrad Möckel, Gonzalo Rosso, Veronika Kurbel, Asha Parmar, Gargi Sharma, Kristina Karandasheva, Shada Abuhattum, Olga Lyraki, Timon Beck, Paul Müller, Raimund Schlüßler, Renato Frischknecht, Anja Wehner, Nicole Krombholz, Barbara Steigenberger, Dimitris Beis, Aya Takeoka, Ingmar Blümcke, Stephanie Möllmert, Kanwarpal Singh, Jochen Guck, Katja Kobow, Daniel Wehner

Nat Commun. 2023; 14: 6814. Published online 2023 Oct 26. doi: 10.1038/s41467-023-42339-7

PMCID:: PMC10603094

Article PDF–9.8M

Select item 78472653.

Ccn2a is an injury-induced matricellular factor that promotes cardiac regeneration in zebrafish

Debanjan Mukherjee, Ganesh Wagh, Mayssa H. Mokalled, Zacharias Kontarakis, Amy L. Dickson, Amey Rayrikar, Stefan Günther, Kenneth D. Poss, Didier Y. R. Stainier, Chinmoy Patra

Development. 2021 Jan 15; 148(2): dev193219. Published online 2021 Jan 18. doi: 10.1242/dev.193219

PMCID:: PMC7847265

Article

Select item 70474094.

Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility

Hyung Joo Lee, Yiran Hou, Yujie Chen, Zea Z. Dailey, Aiyana Riddihough, Hyo Sik Jang, Ting Wang, Stephen L. Johnson

Genome Biol. 2020; 21: 52. Published online 2020 Feb 27. doi: 10.1186/s13059-020-1948-0

PMCID:: PMC7047409

Article PDF–4.5M

Select item 67467935.

ECM alterations in Fndc3a (Fibronectin Domain Containing Protein 3A) deficient zebrafish cause temporal fin development and regeneration defects

Daniel Liedtke, Melanie Orth, Michelle Meissler, Sinje Geuer, Sabine Knaup, Isabell Köblitz, Eva Klopocki

Sci Rep. 2019; 9: 13383. Published online 2019 Sep 16. doi: 10.1038/s41598-019-50055-w

PMCID:: PMC6746793

Article PDF–4.6M

Select item 36992806.

An exclusively mesodermal origin of fin mesenchyme demonstrates that zebrafish trunk neural crest does not generate ectomesenchyme

Raymond Teck Ho Lee, Ela W. Knapik, Jean Paul Thiery, Thomas J. Carney

Development. 2013 Jul 15; 140(14): 2923–2932. doi: 10.1242/dev.093534

PMCID:: PMC3699280

Article

Select item 34235137.

Hemicentin 2 and Fibulin 1 are required for epidermal-dermal junction formation and fin mesenchymal cell migration during zebrafish development

Natália Martins Feitosa, Jinli Zhang, Thomas J. Carney, Manuel Metzger, Vladimir Korzh, Wilhelm Bloch, Matthias Hammerschmidt

Dev Biol. Author manuscript; available in PMC 2013 Sep 15.

Published in final edited form as: Dev Biol. 2012 Sep 15; 369(2): 235–248. Published online 2012 Jul 6. doi: 10.1016/j.ydbio.2012.06.023

PMCID:: PMC3423513

Article PDF–3.2M

Select item 32531108.

Nephronectin regulates atrioventricular canal differentiation via Bmp4-Has2 signaling in zebrafish

Chinmoy Patra, Florian Diehl, Fulvia Ferrazzi, Machteld J. van Amerongen, Tatyana Novoyatleva, Liliana Schaefer, Christian Mühlfeld, Benno Jungblut, Felix B. Engel

Development. 2011 Oct 15; 138(20): 4499–4509. doi: 10.1242/dev.067454

PMCID:: PMC3253110

Article

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Article PDF–1.0M

Select item 316259610.

Comparative Transcriptome Analyses Indicate Molecular Homology of Zebrafish Swimbladder and Mammalian Lung

Weiling Zheng, Zhengyuan Wang, John E. Collins, Robert M. Andrews, Derek Stemple, Zhiyuan Gong

PLoS One. 2011; 6(8): e24019. Published online 2011 Aug 26. doi: 10.1371/journal.pone.0024019

PMCID:: PMC3162596

Article PDF–1.1M

Select item 310960311.

Evolutionary plasticity of segmentation clock networks

Aurélie J. Krol, Daniela Roellig, Mary-Lee Dequéant, Olivier Tassy, Earl Glynn, Gaye Hattem, Arcady Mushegian, Andrew C. Oates, Olivier Pourquié

Development. 2011 Jul 1; 138(13): 2783–2792. doi: 10.1242/dev.063834

PMCID:: PMC3109603

Article

Select item 119954612.

The zebrafish gene map defines ancestral vertebrate chromosomes

Ian G. Woods, Catherine Wilson, Brian Friedlander, Patricia Chang, Daengnoy K. Reyes, Rebecca Nix, Peter D. Kelly, Felicia Chu, John H. Postlethwait, William S. Talbot

Genome Res. 2005 Sep; 15(9): 1307–1314. doi: 10.1101/gr.4134305

PMCID:: PMC1199546

Article PDF–595K

Select item 13924113.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Article PDF–118K

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