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Select item 102451381.

Facial analytics based on a coordinate extrapolation system (zFACE) for morphometric phenotyping of developing zebrafish

Lorena Maili, Oscar E. Ruiz, Philip H. Kahan, Frankie Chiu, Stephen T. Larson, S. Shahrukh Hashmi, Jacqueline T. Hecht, George T. Eisenhoffer

Dis Model Mech. 2023 Jun 1; 16(6): dmm049868. Published online 2023 Jun 2. doi: 10.1242/dmm.049868

PMCID:: PMC10245138

Abstract Article

Select item 89187872.

PRDM paralogs antagonistically balance Wnt/β-catenin activity during craniofacial chondrocyte differentiation

Lomeli C. Shull, Ezra S. Lencer, Hyun Min Kim, Susumu Goyama, Mineo Kurokawa, James C. Costello, Kenneth Jones, Kristin B. Artinger

Development. 2022 Feb 15; 149(4): dev200082. Published online 2022 Feb 24. doi: 10.1242/dev.200082

PMCID:: PMC8918787

Abstract Article

Select item 83831153.

A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos

Shimon M. Rosenthal, Tvisha Misra, Hala Abdouni, Tess C. Branon, Alice Y. Ting, Ian C. Scott, Anne-Claude Gingras

Mol Cell Proteomics. 2021; 20: 100128. Published online 2021 Jul 29. doi: 10.1016/j.mcpro.2021.100128

PMCID:: PMC8383115

Abstract Article PDF–2.4M

Select item 78208754.

Smarca5-mediated epigenetic programming facilitates fetal HSPC development in vertebrates

Yanyan Ding, Wen Wang, Dongyuan Ma, Guixian Liang, Zhixin Kang, Yuanyuan Xue, Yifan Zhang, Lu Wang, Jian Heng, Yong Zhang, Feng Liu

Blood. 2021 Jan 14; 137(2): 190–202. Prepublished online 2020 Aug 5. doi: 10.1182/blood.2020005219

PMCID:: PMC7820875

Abstract Article

Select item 65946595.

The gene regulatory basis of genetic compensation during neural crest induction

Christopher M. Dooley, Neha Wali, Ian M. Sealy, Richard J. White, Derek L. Stemple, John E. Collins, Elisabeth M. Busch-Nentwich

PLoS Genet. 2019 Jun; 15(6): e1008213. Published online 2019 Jun 14. doi: 10.1371/journal.pgen.1008213

PMCID:: PMC6594659

Abstract Article PDF–4.0M

Select item 54768296.

Chromatin-remodelling factor Brg1 regulates myocardial proliferation and regeneration in zebrafish

Chenglu Xiao, Lu Gao, Yu Hou, Congfei Xu, Nannan Chang, Fang Wang, Keping Hu, Aibin He, Ying Luo, Jun Wang, Jinrong Peng, Fuchou Tang, Xiaojun Zhu, Jing-Wei Xiong

Nat Commun. 2016; 7: 13787. Published online 2016 Dec 8. doi: 10.1038/ncomms13787

PMCID:: PMC5476829

Abstract Article PDF–4.1M

Select item 46403757.

Med14 cooperates with brg1 in the differentiation of skeletogenic neural crest

Xin Lou, Jeffrey T. A. Burrows, Ian C. Scott

BMC Dev Biol. 2015; 15: 41. Published online 2015 Nov 9. doi: 10.1186/s12861-015-0090-9

PMCID:: PMC4640375

Abstract Article PDF–3.9M

Select item 46341378.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 45280559.

Mutation of kri1l causes definitive hematopoiesis failure via PERK-dependent excessive autophagy induction

Xiao-E Jia, Ke Ma, Tao Xu, Lei Gao, Shuang Wu, Cong Fu, Wenjuan Zhang, Zhizhang Wang, Kaiyu Liu, Mei Dong, Changbin Jing, Chunguang Ren, Zhiwei Dong, Yi Chen, Yi Jin, Qiuhua Huang, Xing Chang, Min Deng, Li Li, Lingfei Luo, Jun Zhu, Yongjun Dang, Hung-Chun Chang, Leonard I Zon, Yi Zhou, Saijuan Chen, Weijun Pan

Cell Res. 2015 Aug; 25(8): 946–962. Published online 2015 Jul 3. doi: 10.1038/cr.2015.81

PMCID:: PMC4528055

Abstract Article PDF–15M

Select item 395995210.

A Network of Epigenetic Regulators Guide Developmental Hematopoiesis In Vivo

Hsuan-Ting Huang, Katie L. Kathrein, Abby Barton, Zachary Gitlin, Yue-Hua Huang, Thomas P. Ward, Oliver Hofmann, Anthony Dibiase, Anhua Song, Svitlana Tyekucheva, Winston Hide, Yi Zhou, Leonard I. Zon

Nat Cell Biol. Author manuscript; available in PMC 2014 Jun 1.

Published in final edited form as: Nat Cell Biol. 2013 Dec; 15(12): 1516–1525. Published online 2013 Nov 17. doi: 10.1038/ncb2870

PMCID:: PMC3959952

Abstract Article PDF–1.8M

Select item 388849511.

Expression profiling of the RPE in zebrafish smarca4 mutant revealed altered signals that potentially affect RPE and retinal differentiation

Liyun Zhang, Ping Ma, Ross Collery, Sara Trowbridge, Mingzhi Zhang, Wenxuan Zhong, Yuk Fai Leung

Mol Vis. 2014; 20: 56–72. Published online 2014 Jan 6.

PMCID:: PMC3888495

Abstract Article PDF–2.3M

Select item 367580912.

Stable Isotope Labeling in Zebrafish Allows in Vivo Monitoring of Cardiac Morphogenesis

Anne Konzer, Aaron Ruhs, Helene Braun, Benno Jungblut, Thomas Braun, Marcus Krüger

Mol Cell Proteomics. 2013 Jun; 12(6): 1502–1512. Published online 2013 Feb 14. doi: 10.1074/mcp.M111.015594

PMCID:: PMC3675809

Abstract Article PDF–2.2M

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 315596714.

Cellular Expression of Smarca4 (Brg1)-regulated Genes in Zebrafish Retinas

Monica R Hensley, Farida Emran, Sylvia Bonilla, Liyun Zhang, Wenxuan Zhong, Paul Grosu, John E Dowling, Yuk Fai Leung

BMC Dev Biol. 2011; 11: 45. Published online 2011 Jul 14. doi: 10.1186/1471-213X-11-45

PMCID:: PMC3155967

Abstract Article PDF–27M

Select item 309687515.

Chromatin remodelling complex dosage modulates transcription factor function in heart development

Jun K. Takeuchi, Xin Lou, Jeffrey M. Alexander, Hiroe Sugizaki, Paul Delgado-Olguín, Alisha K. Holloway, Alessandro D. Mori, John N. Wylie, Chantilly Munson, Yonghong Zhu, Yu-Qing Zhou, Ru-Fang Yeh, R. Mark Henkelman, Richard P. Harvey, Daniel Metzger, Pierre Chambon, Didier Y. R. Stainier, Katherine S. Pollard, Ian C. Scott, Benoit G. Bruneau

Nat Commun. 2011 Feb 8; 2: 187. Published online 2011 Feb 8. doi: 10.1038/ncomms1187

PMCID:: PMC3096875

Abstract Article PDF–1.0M

Select item 289757216.

Myogenic MicroRNA Expression Requires ATP-Dependent Chromatin Remodeling Enzyme Function

Chandrashekara Mallappa, Brian T. Nasipak, Letitiah Etheridge, Elliot J. Androphy, Stephen N. Jones, Charles G. Sagerström, Yasuyuki Ohkawa, Anthony N. Imbalzano

Mol Cell Biol. 2010 Jul; 30(13): 3176–3186. Published online 2010 Apr 20. doi: 10.1128/MCB.00214-10

PMCID:: PMC2897572

Abstract Article PDF–2.8M

Select item 252906317.

Factorial microarray analysis of zebrafish retinal development

Yuk Fai Leung, Ping Ma, Brian A. Link, John E. Dowling

Proc Natl Acad Sci U S A. 2008 Sep 2; 105(35): 12909–12914. Published online 2008 Aug 27. doi: 10.1073/pnas.0806038105

PMCID:: PMC2529063

Abstract Article PDF–908K

Select item 206588118.

Unexpected Novel Relational Links Uncovered by Extensive Developmental Profiling of Nuclear Receptor Expression

Stéphanie Bertrand, Bernard Thisse, Raquel Tavares, Laurent Sachs, Arnaud Chaumot, Pierre-Luc Bardet, Héctor Escrivà, Maryline Duffraisse, Oriane Marchand, Rachid Safi, Christine Thisse, Vincent Laudet

PLoS Genet. 2007 Nov; 3(11): e188. Published online 2007 Nov 9. doi: 10.1371/journal.pgen.0030188

PMCID:: PMC2065881

Abstract Article PDF–1.1M

Select item 119954619.

The zebrafish gene map defines ancestral vertebrate chromosomes

Ian G. Woods, Catherine Wilson, Brian Friedlander, Patricia Chang, Daengnoy K. Reyes, Rebecca Nix, Peter D. Kelly, Felicia Chu, John H. Postlethwait, William S. Talbot

Genome Res. 2005 Sep; 15(9): 1307–1314. doi: 10.1101/gr.4134305