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Select item 109405951.

The chromatin factors SET-26 and HCF-1 oppose the histone deacetylase HDA-1 in longevity and gene regulation in C. elegans

Felicity J. Emerson, Caitlin Chiu, Laura Y. Lin, Christian G. Riedel, Ming Zhu, Siu Sylvia Lee

Nat Commun. 2024; 15: 2320. Published online 2024 Mar 14. doi: 10.1038/s41467-024-46510-6

PMCID:: PMC10940595

Abstract Article PDF–3.5M

Select item 108029522.

Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly

Marcos Schaan Profes, Araven Tiroumalechetty, Neel Patel, Stephanie S. Lauar, Simone Sidoli, Peri T. Kurshan

PLoS Biol. 2024 Jan; 22(1): e3002466. Published online 2024 Jan 22. doi: 10.1371/journal.pbio.3002466

PMCID:: PMC10802952

Abstract Article PDF–2.7M

Select item 106176263.

SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans

Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino

Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755

PMCID:: PMC10617626

Abstract Article

Select item 105208894.

AKIR-1 regulates proteasome subcellular function in Caenorhabditis elegans

Johanna Pispa, Elisa Mikkonen, Leena Arpalahti, Congyu Jin, Carmen Martínez-Fernández, Julián Cerón, Carina I. Holmberg

iScience. 2023 Oct 20; 26(10): 107886. Published online 2023 Sep 11. doi: 10.1016/j.isci.2023.107886

PMCID:: PMC10520889

Abstract Article PDF–3.9M

Select item 103207665.

A transcriptional cofactor regulatory network for the C. elegans intestine

Brent B Horowitz, Shivani Nanda, Albertha J M Walhout

G3 (Bethesda) 2023 Jul; 13(7): jkad096. Published online 2023 Apr 29. doi: 10.1093/g3journal/jkad096

PMCID:: PMC10320766

Abstract Article PDF–1.9M

Select item 84140786.

Deletion of a putative HDA-1 binding site in the hlh-2 promoter eliminates expression in C. elegans dorsal uterine cells

Taylor N Medwig-Kinney, Nicholas J Palmisano, David Q Matus

MicroPubl Biol. 2021; 2021: 10.17912/micropub.biology.000449. Published online 2021 Sep 2. doi: 10.17912/micropub.biology.000449

PMCID:: PMC8414078

Abstract Article PDF–1.0M

Select item 83311837.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 81311018.

HDAC1 SUMOylation promotes Argonaute-directed transcriptional silencing in C. elegans

Heesun Kim, Yue-He Ding, Gangming Zhang, Yong-Hong Yan, Darryl Conte, Jr, Meng-Qiu Dong, Craig C Mello

eLife. 2021; 10: e63299. Published online 2021 May 18. doi: 10.7554/eLife.63299

PMCID:: PMC8131101

Abstract Article PDF–8.8M

Select item 81104899.

Overlapping and non-overlapping roles of the class-I histone deacetylase-1 corepressors LET-418, SIN-3, and SPR-1 in Caenorhabditis elegans embryonic development

Yukihiro Kubota, Yuto Ohnishi, Tasuku Hamasaki, Gen Yasui, Natsumi Ota, Hiromu Kitagawa, Arashi Esaki, Muhamad Fahmi, Masahiro Ito

Genes Genomics. 2021; 43(5): 553–565. Published online 2021 Mar 19. doi: 10.1007/s13258-021-01076-1

PMCID:: PMC8110489

Abstract Article PDF–3.2M

Select item 801257310.

Inactivating histone deacetylase HDA promotes longevity by mobilizing trehalose metabolism

Ruofan Yu, Xiaohua Cao, Luyang Sun, Jun-yi Zhu, Brian M Wasko, Wei Liu, Emeline Crutcher, Haiying Liu, Myeong Chan Jo, Lidong Qin, Matt Kaeberlein, Zhe Han, Weiwei Dang

Nat Commun. 2021; 12: 1981. Published online 2021 Mar 31. doi: 10.1038/s41467-021-22257-2

PMCID:: PMC8012573

Abstract Article PDF–3.1M

Select item 799517611.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 761325812.

Gene expression profiling of epidermal cell types in C. elegans using Targeted DamID

Dimitris Katsanos, Mar Ferrando-Marco, Iqrah Razzaq, Gabriel Aughey, Tony D. Southall, Michalis Barkoulas

Development. 2021 Sep 1; 148(17): dev199452. Published online 2021 Sep 3. doi: 10.1242/dev.199452

PMCID:: PMC7613258

Abstract Article

Select item 749392413.

Histone deacetylase HDA-1 modulates mitochondrial stress response and longevity

Li-Wa Shao, Qi Peng, Mingyue Dong, Kaiyu Gao, Yumei Li, Yi Li, Chuan-Yun Li, Ying Liu

Nat Commun. 2020; 11: 4639. Published online 2020 Sep 15. doi: 10.1038/s41467-020-18501-w

PMCID:: PMC7493924

Abstract Article PDF–2.5M

Select item 740046614.

NuRD mediates mitochondrial stress–induced longevity via chromatin remodeling in response to acetyl-CoA level

Di Zhu, Xueying Wu, Jun Zhou, Xinyu Li, Xiahe Huang, Jiasheng Li, Junbo Wu, Qian Bian, Yingchun Wang, Ye Tian

Sci Adv. 2020 Jul; 6(31): eabb2529. Published online 2020 Jul 31. doi: 10.1126/sciadv.abb2529

PMCID:: PMC7400466

Abstract Article PDF–2.9M

Select item 705021215.

Regulation of Nucleotide Metabolism and Germline Proliferation in Response to Nucleotide Imbalance and Genotoxic Stresses by EndoU Nuclease

Fan Jia, Congwu Chi, Min Han

Cell Rep. Author manuscript; available in PMC 2020 Mar 2.

Published in final edited form as: Cell Rep. 2020 Feb 11; 30(6): 1848–1861.e5. doi: 10.1016/j.celrep.2020.01.050

PMCID:: PMC7050212

Abstract Article PDF–1.8M

Select item 667517016.

Differential Contributions of Caenorhabditis elegans Histone Deacetylases to Huntingtin Polyglutamine Toxicity

Emily A. Bates, Martin Victor, Adriana K. Jones, Yang Shi, Anne C. Hart

J Neurosci. 2006 Mar 8; 26(10): 2830–2838. doi: 10.1523/JNEUROSCI.3344-05.2006

PMCID:: PMC6675170

Abstract Article PDF–303K

Select item 621659017.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 494261218.

The RNA-binding protein repertoire of Arabidopsis thaliana

Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring

Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766

PMCID:: PMC4942612

Abstract Article PDF–1.2M

Select item 485894519.

In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics

Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach

Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975

PMCID:: PMC4858945

Abstract Article PDF–3.1M

Select item 485068720.

A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

Olivier Zugasti, Nishant Thakur, Jérôme Belougne, Barbara Squiban, C. Léopold Kurz, Julien Soulé, Shizue Omi, Laurent Tichit, Nathalie Pujol, Jonathan J. Ewbank

BMC Biol. 2016; 14: 35. Published online 2016 Apr 29. doi: 10.1186/s12915-016-0256-3