PMC Links for GEO Profiles (Select 5927021) - PMC

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Article PDF–2.2M

Select item 45283294.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Article PDF–4.9M

Select item 43528875.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Article PDF–1022K

Select item 41151546.

Networks of bZIP protein-protein interactions diversified over a billion years of evolution

Aaron W. Reinke, Jiyeon Baek, Orr Ashenberg, Amy E. Keating

Science. Author manuscript; available in PMC 2014 Jul 30.

Published in final edited form as: Science. 2013 May 10; 340(6133): 730–734. doi: 10.1126/science.1233465

PMCID:: PMC4115154

Article PDF–449K

Select item 40639287.

A Novel Cell Death Gene Acts to Repair Patterning Defects in Drosophila melanogaster

Kentaro M. Tanaka, Aya Takahashi, Naoyuki Fuse, Toshiyuki Takano-Shimizu-Kouno

Genetics. 2014 Jun; 197(2): 739–742. Published online 2014 Mar 25. doi: 10.1534/genetics.114.163337

PMCID:: PMC4063928

Article PDF–1.2M

Select item 40537798.

Spatial expression of transcription factors in Drosophila embryonic organ development

Ann S Hammonds, Christopher A Bristow, William W Fisher, Richard Weiszmann, Siqi Wu, Volker Hartenstein, Manolis Kellis, Bin Yu, Erwin Frise, Susan E Celniker

Genome Biol. 2013; 14(12): R140. Published online 2013 Dec 20. doi: 10.1186/gb-2013-14-12-r140

PMCID:: PMC4053779

Article PDF–1.8M

Select item 37431349.

A global change in RNA polymerase II pausing during the Drosophila midblastula transition

Kai Chen, Jeff Johnston, Wanqing Shao, Samuel Meier, Cynthia Staber, Julia Zeitlinger

eLife. 2013; 2: e00861. Published online 2013 Aug 13. doi: 10.7554/eLife.00861

PMCID:: PMC3743134

Article PDF–4.1M

Select item 367264810.

Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription

Abbie Saunders, Leighton J. Core, Catherine Sutcliffe, John T. Lis, Hilary L. Ashe

Genes Dev. 2013 May 15; 27(10): 1146–1158. doi: 10.1101/gad.215459.113

PMCID:: PMC3672648

Article PDF–2.1M

Select item 353067711.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Article PDF–1.5M

Select item 346946712.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Article PDF–1.6M

Select item 304928113.

Hedgehog targets in the Drosophila embryo and the mechanisms that generate tissue-specific outputs of Hedgehog signaling

Brian Biehs, Katerina Kechris, SongMei Liu, Thomas B. Kornberg

Development. 2010 Nov 15; 137(22): 3887–3898. doi: 10.1242/dev.055871

PMCID:: PMC3049281

Article

Select item 304044114.

A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene

G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger

Cell. Author manuscript; available in PMC 2011 Nov 12.

Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047

PMCID:: PMC3040441

Article PDF–2.0M

Select item 282505315.

Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin

Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker

Science. Author manuscript; available in PMC 2010 Feb 19.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816

PMCID:: PMC2825053

Article PDF–858K

Select item 281928016.

The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin

Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen

Science. Author manuscript; available in PMC 2010 Feb 10.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815

Correction in:: volume 317 on page 1325

PMCID:: PMC2819280

Article PDF–1.3M

Select item 118564817.

Combined Evidence Annotation of Transposable Elements in Genome Sequences

Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere

PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022

PMCID:: PMC1185648

Article PDF–273K

Select item 32142818.

Drosophila melanogaster MNK/Chk2 and p53 Regulate Multiple DNA Repair and Apoptotic Pathways following DNA Damage

Michael H. Brodsky, Brian T. Weinert, Garson Tsang, Yikang S. Rong, Nadine M. McGinnis, Kent G. Golic, Donald C. Rio, Gerald M. Rubin

Mol Cell Biol. 2004 Feb; 24(3): 1219–1231. doi: 10.1128/MCB.24.3.1219-1231.2004

PMCID:: PMC321428

Article PDF–952K

Select item 18663419.

B-ZIP Proteins Encoded by the Drosophila Genome: Evaluation of Potential Dimerization Partners

Jan Fassler, David Landsman, Asha Acharya, Jonathan R. Moll, Maria Bonovich, Charles Vinson

Genome Res. 2002 Aug; 12(8): 1190–1200. doi: 10.1101/gr.67902

PMCID:: PMC186634

Article PDF–472K

Select item 15118720.

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen

Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085

PMCID:: PMC151187

Article PDF–280K

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