PMC Links for GEO Profiles (Select 59233908) - PMC

Select item 109176601.

Genetic determinants of micronucleus formation in vivo

D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus

Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0

PMCID:: PMC10917660

Abstract Article PDF–4.8M

Select item 102436782.

Encephalopsin (OPN3) is required for normal refractive development and the GO/GROW response to induced myopia

Courtney Linne, Khine Yin Mon, Shane D’Souza, Heonuk Jeong, Xiaoyan Jiang, Dillon M. Brown, Kevin Zhang, Shruti Vemaraju, Kazuo Tsubota, Toshihide Kurihara, Machelle T. Pardue, Richard A. Lang

Mol Vis. 2023; 29: 39–57. Published online 2023 May 14.

PMCID:: PMC10243678

Abstract Article PDF–8.2M

Select item 95320193.

Comprehensive Behavioral Analysis of Opsin 3 (Encephalopsin)-Deficient Mice Identifies Role in Modulation of Acoustic Startle Reflex

Brian A. Upton, Gowri Nayak, Ivy Schweinzger, Shane P. D’Souza, Charles V. Vorhees, Michael T. Williams, Brian R. Earl, Richard A. Lang

eNeuro. 2022 Sep-Oct; 9(5): ENEURO.0202-22.2022. Prepublished online 2022 Aug 30. Published online 2022 Sep 27. doi: 10.1523/ENEURO.0202-22.2022

PMCID:: PMC9532019

Abstract Article PDF–2.5M

Select item 77809954.

Opsin 3–G_αs Promotes Airway Smooth Muscle Relaxation Modulated by G Protein Receptor Kinase 2

Amy D. Wu, William Dan, Yi Zhang, Shruti Vemaraju, Brian A. Upton, Richard A. Lang, Ethan D. Buhr, Dan E. Berkowitz, George Gallos, Charles W. Emala, Peter D. Yim

Am J Respir Cell Mol Biol. 2021 Jan; 64(1): 59–68. doi: 10.1165/rcmb.2020-0392OC

PMCID:: PMC7780995

Abstract Article PDF–1.2M

Select item 74779525.

Endogenous Opsin 3 (OPN3) Protein Expression in the Adult Brain Using a Novel OPN3-mCherry Knock-In Mouse Model

Lauren E. Olinski, Ayumi C. Tsuda, Julie A. Kauer, Elena Oancea

eNeuro. 2020 Sep-Oct; 7(5): ENEURO.0107-20.2020. Prepublished online 2020 Jul 31. Published online 2020 Sep 2. doi: 10.1523/ENEURO.0107-20.2020

PMCID:: PMC7477952

Abstract Article PDF–9.4M

Select item 74153226.

Wounding Induces Facultative Opn5-Dependent Circadian Photoreception in the Murine Cornea

Nicolás M. Díaz, Richard A. Lang, Russell N. Van Gelder, Ethan D. Buhr

Invest Ophthalmol Vis Sci. 2020 Jun; 61(6): 37. Published online 2020 Jun 16. doi: 10.1167/iovs.61.6.37

PMCID:: PMC7415322

Abstract Article PDF–9.3M

Select item 73419817.

Adaptive Thermogenesis in Mice Is Enhanced by Opsin 3-Dependent Adipocyte Light Sensing

Gowri Nayak, Kevin X. Zhang, Shruti Vemaraju, Yoshinobu Odaka, Ethan D. Buhr, Amanda Holt-Jones, Stace Kernodle, April N. Smith, Brian A. Upton, Shane D’Souza, Jesse J. Zhan, Nicolás Diaz, Minh-Thanh Nguyen, Rajib Mukherjee, Shannon A. Gordon, Gang Wu, Robert Schmidt, Xue Mei, Nathan T. Petts, Matthew Batie, Sujata Rao, John B. Hogenesch, Takahisa Nakamura, Alison Sweeney, Randy J. Seeley, Russell N. Van Gelder, Joan Sanchez-Gurmaches, Richard A. Lang

Cell Rep. Author manuscript; available in PMC 2020 Jul 8.

Published in final edited form as: Cell Rep. 2020 Jan 21; 30(3): 672–686.e8. doi: 10.1016/j.celrep.2019.12.043

PMCID:: PMC7341981

Abstract Article PDF–1.7M

Select item 70591268.

Illuminating insights into opsin 3 function in the skin

Lauren E. Olinski, Erica M. Lin, Elena Oancea

Adv Biol Regul. Author manuscript; available in PMC 2021 Jan 1.

Published in final edited form as: Adv Biol Regul. 2020 Jan; 75: 100668. Published online 2019 Oct 7. doi: 10.1016/j.jbior.2019.100668

PMCID:: PMC7059126

Abstract Article PDF–2.4M

Select item 70349249.

Cell-autonomous light sensitivity via Opsin3 regulates fuel utilization in brown adipocytes

Mari Sato, Tadataka Tsuji, Kunyan Yang, Xiaozhi Ren, Jonathan M. Dreyfuss, Tian Lian Huang, Chih-Hao Wang, Farnaz Shamsi, Luiz O. Leiria, Matthew D. Lynes, King-Wai Yau, Yu-Hua Tseng

PLoS Biol. 2020 Feb; 18(2): e3000630. Published online 2020 Feb 10. doi: 10.1371/journal.pbio.3000630

PMCID:: PMC7034924

Abstract Article PDF–3.7M

Select item 678272410.

Encephalopsin: A Novel Mammalian Extraretinal Opsin Discretely Localized in the Brain

Seth Blackshaw, Solomon H. Snyder

J Neurosci. 1999 May 15; 19(10): 3681–3690. doi: 10.1523/JNEUROSCI.19-10-03681.1999

PMCID:: PMC6782724

Abstract Article PDF–959K

Select item 638350511.

Airway smooth muscle photorelaxation via opsin receptor activation

Peter D. Yim, George Gallos, Jose F. Perez-Zoghbi, Yi Zhang, Dingbang Xu, Amy Wu, Dan E. Berkowitz, Charles W. Emala

Am J Physiol Lung Cell Mol Physiol. 2019 Jan 1; 316(1): L82–L93. Published online 2018 Oct 4. doi: 10.1152/ajplung.00135.2018

PMCID:: PMC6383505

Abstract Article

Select item 462085512.

Neuropsin (OPN5)-mediated photoentrainment of local circadian oscillators in mammalian retina and cornea

Ethan D. Buhr, Wendy W. S. Yue, Xiaozhi Ren, Zheng Jiang, Hsi-Wen Rock Liao, Xue Mei, Shruti Vemaraju, Minh-Thanh Nguyen, Randall R. Reed, Richard A. Lang, King-Wai Yau, Russell N. Van Gelder

Proc Natl Acad Sci U S A. 2015 Oct 20; 112(42): 13093–13098. Published online 2015 Sep 21. doi: 10.1073/pnas.1516259112

PMCID:: PMC4620855

Abstract Article PDF–1.3M

Select item 357241013.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 317805914.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253415.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 141356816.

BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran

PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086

PMCID:: PMC1413568

Article PDF–99K

Select item 128256917.

Fezl regulates the differentiation and axon targeting of layer 5 subcortical projection neurons in cerebral cortex

Bin Chen, Laura R. Schaevitz, Susan K. McConnell

Proc Natl Acad Sci U S A. 2005 Nov 22; 102(47): 17184–17189. Published online 2005 Nov 11. doi: 10.1073/pnas.0508732102

PMCID:: PMC1282569

Abstract Article PDF–668K

Select item 31099218.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098019.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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