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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 106378283.

The Saccharomyces cerevisiae acetyltransferase Gcn5 exerts antagonistic pleiotropic effects on chronological ageing

Kaiqiang Li, Gabriele Mocciaro, Jules L. Griffin, Nianshu Zhang

Aging (Albany NY) 2023 Oct 31; 15(20): 10915–10937. Published online 2023 Oct 23. doi: 10.18632/aging.205109

PMCID:: PMC10637828

Abstract Article PDF–3.0M

Select item 102266194.

The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module

Sara T. Haile, Sanim Rahman, James K. Fields, Benjamin C. Orsburn, Namandjé N. Bumpus, Cynthia Wolberger

Biochim Biophys Acta Gene Regul Mech. Author manuscript; available in PMC 2023 Jun 1.

Published in final edited form as: Biochim Biophys Acta Gene Regul Mech. 2023 Jun; 1866(2): 194929. Published online 2023 Mar 24. doi: 10.1016/j.bbagrm.2023.194929

PMCID:: PMC10226619

Abstract Article PDF–1.8M

Select item 101645695.

Differential requirements for Gcn5 and NuA4 HAT activities in the starvation-induced versus basal transcriptomes

Qiaoyun Zheng, Hongfang Qiu, Hongen Zhang, Alan G Hinnebusch

Nucleic Acids Res. 2023 May 8; 51(8): 3696–3721. Published online 2023 Mar 2. doi: 10.1093/nar/gkad099

PMCID:: PMC10164569

Abstract Article PDF–6.9M

Select item 100858066.

Functional tug of war between kinases, phosphatases, and the Gcn5 acetyltransferase in chromatin and cell cycle checkpoint controls

Qihao Liu, Lorraine Pillus, Emily L Petty

G3 (Bethesda) 2023 Apr; 13(4): jkad021. Published online 2023 Feb 6. doi: 10.1093/g3journal/jkad021

PMCID:: PMC10085806

Abstract Article PDF–1003K

Select item 96309867.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 93404808.

Nuclear pore complex acetylation regulates mRNA export and cell cycle commitment in budding yeast

Mercè Gomar‐Alba, Vasilisa Pozharskaia, Bogdan Cichocki, Celia Schaal, Arun Kumar, Basile Jacquel, Gilles Charvin, J Carlos Igual, Manuel Mendoza

EMBO J. 2022 Aug; 41(15): e110271. Published online 2022 Jun 23. doi: 10.15252/embj.2021110271

PMCID:: PMC9340480

Abstract Article PDF–10M

Select item 92966739.

Conformational landscape of the yeast SAGA complex as revealed by cryo-EM

Diana Vasyliuk, Joeseph Felt, Ellen D. Zhong, Bonnie Berger, Joseph H. Davis, Calvin K. Yip

Sci Rep. 2022; 12: 12306. Published online 2022 Jul 19. doi: 10.1038/s41598-022-16391-0

PMCID:: PMC9296673

Abstract Article PDF–3.9M

Select item 920981110.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 863312811.

Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor

Emily J Parnell, Timothy J Parnell, David J Stillman

Genetics. 2021 Oct; 219(2): iyab120. Published online 2021 Jul 28. doi: 10.1093/genetics/iyab120

PMCID:: PMC8633128

Abstract Article PDF–2.0M

Select item 852746912.

Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae

Margaret K Shirra, Rachel A Kocik, Mitchell A Ellison, Karen M Arndt

G3 (Bethesda) 2021 Nov; 11(11): jkab298. Published online 2021 Aug 31. doi: 10.1093/g3journal/jkab298

PMCID:: PMC8527469

Abstract Article PDF–1.0M

Select item 822423513.

Ume6 Acts as a Stable Platform To Coordinate Repression and Activation of Early Meiosis-Specific Genes in Saccharomyces cerevisiae

Sheetal A. Raithatha, Shivani Vaza, M. Touhidul Islam, Brianna Greenwood, David T. Stuart

Mol Cell Biol. 2021 Jul; 41(7): e00378-20. Prepublished online 2021 May 3. Published online 2021 Jun 23. doi: 10.1128/MCB.00378-20

PMCID:: PMC8224235

Abstract Article PDF–1.4M

Select item 821181614.

Epigenetics Identifier screens reveal regulators of chromatin acylation and limited specificity of acylation antibodies

Leonie Kollenstart, Sophie C. van der Horst, Kees Vreeken, George M. C. Janssen, Fabrizio Martino, Hanneke Vlaming, Peter A. van Veelen, Fred van Leeuwen, Haico van Attikum

Sci Rep. 2021; 11: 12795. Published online 2021 Jun 17. doi: 10.1038/s41598-021-91359-0

PMCID:: PMC8211816

Abstract Article PDF–6.7M

Select item 819177515.

FACT interacts with Set3 HDAC and fine-tunes GAL1 transcription in response to environmental stimulation

He Leng, Shaofeng Liu, Yang Lei, Yuantao Tang, Shijia Gu, Jiazhi Hu, She Chen, Jianxun Feng, Qing Li

Nucleic Acids Res. 2021 Jun 4; 49(10): 5502–5519. Published online 2021 May 8. doi: 10.1093/nar/gkab312

PMCID:: PMC8191775

Abstract Article PDF–3.0M

Select item 813191516.

SAGA and SAGA-like SLIK transcriptional coactivators are structurally and biochemically equivalent

Klaudia Adamus, Cyril Reboul, Jarrod Voss, Cheng Huang, Ralf B. Schittenhelm, Sarah N. Le, Andrew M. Ellisdon, Hans Elmlund, Marion Boudes, Dominika Elmlund

J Biol Chem. 2021 Jan-Jun; 296: 100671. Published online 2021 Apr 15. doi: 10.1016/j.jbc.2021.100671

PMCID:: PMC8131915

Abstract Article PDF–2.0M

Select item 806308517.

MutSα mismatch repair protein stability is governed by subunit interaction, acetylation, and ubiquitination

Tim Arlow, Junwon Kim, Joanna E. Haye-Bertolozzi, Cristina Balbás Martínez, Caitlin Fay, Emma Zorensky, Mark D. Rose, Alison E. Gammie

G3 (Bethesda) 2021 Mar; 11(3): jkaa065. Published online 2021 Jan 8. doi: 10.1093/g3journal/jkaa065

PMCID:: PMC8063085

Abstract Article PDF–1.2M

Select item 803514518.

Chromatin regulatory genes differentially interact in networks to facilitate distinct GAL1 activity and noise profiles

David F. Moreno, Murat Acar

Curr Genet. Author manuscript; available in PMC 2022 Apr 1.

Published in final edited form as: Curr Genet. 2021 Apr; 67(2): 267–281. Published online 2020 Nov 7. doi: 10.1007/s00294-020-01124-5

PMCID:: PMC8035145

Abstract Article PDF–1.0M

Select item 780150119.

Transcription shapes genome-wide histone acetylation patterns

Benjamin J. E. Martin, Julie Brind’Amour, Anastasia Kuzmin, Kristoffer N. Jensen, Zhen Cheng Liu, Matthew Lorincz, LeAnn J. Howe

Nat Commun. 2021; 12: 210. Published online 2021 Jan 11. doi: 10.1038/s41467-020-20543-z

PMCID:: PMC7801501

Abstract Article PDF–1.6M

Select item 775888020.

Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction

Pilar Gutierrez-Escribano, Silvia Hormeño, Julene Madariaga-Marcos, Roger Solé-Soler, Francis J. O’Reilly, Kyle Morris, Clara Aicart-Ramos, Ricardo Aramayo, Alex Montoya, Holger Kramer, Juri Rappsilber, Jordi Torres-Rosell, Fernando Moreno-Herrero, Luis Aragon

Mol Cell. 2020 Dec 17; 80(6): 1039–1054.e6. doi: 10.1016/j.molcel.2020.11.012