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Items: 1 to 20 of 30

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
2.
Molecular basis of apoptotic DNA fragmentation by DFF40
Hyun Ji Ha, Hyun Ho Park
Cell Death Dis. 2022 Mar; 13(3): 198. Published online 2022 Mar 2. doi: 10.1038/s41419-022-04662-7
PMCID:
PMC8891305
AbstractArticlePDF–3.5M
3.
Helical filament structure of the DREP3 CIDE domain reveals a unified mechanism of CIDE-domain assembly
So Yeon Lee, Sunghark Kwon, Hyun Ji Ha, Sung Hoon Lee, Hyun Ho Park
Acta Crystallogr D Struct Biol. 2021 Dec 1; 77(Pt 12): 1543–1553. Published online 2021 Nov 11. doi: 10.1107/S2059798321010767
PMCID:
PMC8647176
AbstractArticlePDF–2.5M
4.
CaMKII oxidation is a critical performance/disease trade-off acquired at the dawn of vertebrate evolution
Qinchuan Wang, Erick O. Hernández-Ochoa, Meera C. Viswanathan, Ian D. Blum, Danh C. Do, Jonathan M. Granger, Kevin R. Murphy, An-Chi Wei, Susan Aja, Naili Liu, Corina M. Antonescu, Liliana D. Florea, C. Conover Talbot, Jr., David Mohr, Kathryn R. Wagner, Sergi Regot, Richard M. Lovering, Peisong Gao, Mario A. Bianchet, Mark N. Wu, Anthony Cammarato, Martin F. Schneider, Gabriel S. Bever, Mark E. Anderson
Nat Commun. 2021; 12: 3175. Published online 2021 May 26. doi: 10.1038/s41467-021-23549-3
PMCID:
PMC8155201
AbstractArticlePDF–3.4M
5.
Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila
Hagar Meltzer, Efrat Marom, Idan Alyagor, Oded Mayseless, Victoria Berkun, Netta Segal-Gilboa, Tamar Unger, David Luginbuhl, Oren Schuldiner
Nat Commun. 2019; 10: 2113. Published online 2019 May 8. doi: 10.1038/s41467-019-10140-0
PMCID:
PMC6506539
AbstractArticlePDF–6.5M
6.
Interaction mode of CIDE family proteins in fly: DREP1 and DREP3 acidic surfaces interact with DREP2 and DREP4 basic surfaces
Chang Min Kim, Sun Hee Jeon, Jun-Hyuk Choi, Jun Hyuck Lee, Hyun Ho Park
PLoS One. 2017; 12(12): e0189819. Published online 2017 Dec 14. doi: 10.1371/journal.pone.0189819
PMCID:
PMC5730196
AbstractArticlePDF–10M
7.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
8.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
9.
Sir2 Acts through Hepatocyte Nuclear Factor 4 to maintain insulin Signaling and Metabolic Homeostasis in Drosophila
Rebecca A. S. Palu, Carl S. Thummel
PLoS Genet. 2016 Apr; 12(4): e1005978. Published online 2016 Apr 8. doi: 10.1371/journal.pgen.1005978
PMCID:
PMC4825955
AbstractArticlePDF–1.8M
10.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
11.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
12.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
13.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
14.
Drep-2 is a novel synaptic protein important for learning and memory
Till F M Andlauer, Sabrina Scholz-Kornehl, Rui Tian, Marieluise Kirchner, Husam A Babikir, Harald Depner, Bernhard Loll, Christine Quentin, Varun K Gupta, Matthew G Holt, Shubham Dipt, Michael Cressy, Markus C Wahl, André Fiala, Matthias Selbach, Martin Schwärzel, Stephan J Sigrist
eLife. 2014; 3: e03895. Published online 2014 Nov 13. doi: 10.7554/eLife.03895
PMCID:
PMC4229683
AbstractArticlePDF–4.0M
15.
Toll Mediated Infection Response Is Altered by Gravity and Spaceflight in Drosophila
Katherine Taylor, Kurt Kleinhesselink, Michael D. George, Rachel Morgan, Tangi Smallwood, Ann S. Hammonds, Patrick M. Fuller, Perot Saelao, Jeff Alley, Allen G. Gibbs, Deborah K. Hoshizaki, Laurence von Kalm, Charles A. Fuller, Kathleen M. Beckingham, Deborah A. Kimbrell
PLoS One. 2014; 9(1): e86485. Published online 2014 Jan 24. doi: 10.1371/journal.pone.0086485
PMCID:
PMC3901686
AbstractArticlePDF–2.2M
16.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
17.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
18.
RNA polymerase II kinetics in polo polyadenylation signal selection
Pedro A B Pinto, Telmo Henriques, Marta O Freitas, Torcato Martins, Rita G Domingues, Paulina S Wyrzykowska, Paula A Coelho, Alexandre M Carmo, Claudio E Sunkel, Nicholas J Proudfoot, Alexandra Moreira
EMBO J. 2011 Jun 15; 30(12): 2431–2444. Published online 2011 May 20. doi: 10.1038/emboj.2011.156
PMCID:
PMC3116286
AbstractArticlePDF–1.0M
19.
Crystallization and preliminary X-ray crystallographic studies of the CIDE-domain complex between Drep2 and Drep3 from Drosophila melanogaster
Ok Kyeung Park, Hyun Ho Park
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Apr 1; 67(Pt 4): 457–460. Published online 2011 Mar 25. doi: 10.1107/S1744309111003113
PMCID:
PMC3080149
AbstractArticlePDF–163K
20.
A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene
G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger
Cell. Author manuscript; available in PMC 2011 Nov 12.
Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047
PMCID:
PMC3040441
AbstractArticlePDF–2.0M

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