PMC Links for GEO Profiles (Select 57531001) - PMC

Select item 92035291.

Single-cell transcriptomic analysis of neuroepithelial cells and other cell types of the gills of zebrafish (Danio rerio) exposed to hypoxia

Wen Pan, Rafael Soares Godoy, David P. Cook, Angela L. Scott, Colin A. Nurse, Michael G. Jonz

Sci Rep. 2022; 12: 10144. Published online 2022 Jun 16. doi: 10.1038/s41598-022-13693-1

PMCID:: PMC9203529

Abstract Article PDF–7.4M

Select item 91485662.

Endocardial identity is established during early somitogenesis by Bmp signalling acting upstream of npas4l and etv2

Samuel J. Capon, Veronica Uribe, Nicole Dominado, Ophelia Ehrlich, Kelly A. Smith

Development. 2022 May 1; 149(9): dev190421. Published online 2022 May 9. doi: 10.1242/dev.190421

PMCID:: PMC9148566

Abstract Article

Select item 89104313.

Zebrafish Mutant Lines Reveal the Interplay between nr3c1 and nr3c2 in the GC-Dependent Regulation of Gene Transcription

Alberto Dinarello, Annachiara Tesoriere, Paolo Martini, Camilla Maria Fontana, Davide Volpato, Lorenzo Badenetti, Francesca Terrin, Nicola Facchinello, Chiara Romualdi, Oliana Carnevali, Luisa Dalla Valle, Francesco Argenton

Int J Mol Sci. 2022 Mar; 23(5): 2678. Published online 2022 Feb 28. doi: 10.3390/ijms23052678

PMCID:: PMC8910431

Abstract Article PDF–15M

Select item 67078274.

Genetic compensation triggered by mutant mRNA degradation

Mohamed A. El-Brolosy, Zacharias Kontarakis, Andrea Rossi, Carsten Kuenne, Stefan Günther, Nana Fukuda, Khrievono Kikhi, Giulia L.M. Boezio, Carter Takacs, Shih-Lei Lai, Ryuichi Fukuda, Claudia Gerri, Antonio J. Giraldez, Didier Y.R. Stainier

Nature. Author manuscript; available in PMC 2019 Oct 3.

Published in final edited form as: Nature. 2019 May 7; 568(7751): 193–197. Published online 2019 Apr 3. doi: 10.1038/s41586-019-1064-z

PMCID:: PMC6707827

Abstract Article PDF–4.9M

Select item 61776055.

Deletion of the fih gene encoding an inhibitor of hypoxia-inducible factors increases hypoxia tolerance in zebrafish

Xiaolian Cai, Dawei Zhang, Jing Wang, Xing Liu, Gang Ouyang, Wuhan Xiao

J Biol Chem. 2018 Oct 5; 293(40): 15370–15380. Published online 2018 Aug 20. doi: 10.1074/jbc.RA118.003004

PMCID:: PMC6177605

Abstract Article PDF–5.1M

Select item 48707326.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe

BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z

PMCID:: PMC4870732

Abstract Article PDF–1.8M

Select item 46341377.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 44631878.

Pharmacological HIF2α inhibition improves VHL disease–associated phenotypes in zebrafish model

Ana Martins Metelo, Haley R. Noonan, Xiang Li, Youngnam Jin, Rania Baker, Lee Kamentsky, Yiyun Zhang, Ellen van Rooijen, Jordan Shin, Anne E. Carpenter, Jing-Ruey Yeh, Randall T. Peterson, Othon Iliopoulos

J Clin Invest. 2015 May 1; 125(5): 1987–1997. Published online 2015 Apr 13. doi: 10.1172/JCI73665

PMCID:: PMC4463187

Abstract Article PDF–2.5M

Select item 44183059.

Comprehensive Expression Map of Transcription Regulators in the Adult Zebrafish Telencephalon Reveals Distinct Neurogenic Niches

Nicolas Diotel, Rebecca Rodriguez Viales, Olivier Armant, Martin März, Marco Ferg, Sepand Rastegar, Uwe Strähle

J Comp Neurol. 2015 Jun 1; 523(8): 1202–1221. Published online 2015 Feb 19. doi: 10.1002/cne.23733

PMCID:: PMC4418305

Abstract Article PDF–1.5M

Select item 416292010.

Analysis of hypoxia-inducible factor alpha polyploidization reveals adaptation to Tibetan plateau in the evolution of schizothoracine fish

Lihong Guan, Wei Chi, Wuhan Xiao, Liangbiao Chen, Shunping He

BMC Evol Biol. 2014; 14: 192. Published online 2014 Aug 28. doi: 10.1186/s12862-014-0192-1

PMCID:: PMC4162920

Abstract Article PDF–1.6M

Select item 389449311.

Hypoxia-inducible factor 2α regulates key neutrophil functions in humans, mice, and zebrafish

A. A. Roger Thompson, Philip M. Elks, Helen M. Marriott, Suttida Eamsamarng, Kathryn R. Higgins, Amy Lewis, Lynne Williams, Selina Parmar, Gary Shaw, Emmet E. McGrath, Federico Formenti, Fredericus J. Van Eeden, Vuokko L. Kinnula, Christopher W. Pugh, Ian Sabroe, David H. Dockrell, Edwin R. Chilvers, Peter A. Robbins, Melanie J. Percy, M. Celeste Simon, Randall S. Johnson, Stephen A. Renshaw, Moira K. B. Whyte, Sarah R. Walmsley

Blood. 2014 Jan 16; 123(3): 366–376. Prepublished online 2013 Nov 6. doi: 10.1182/blood-2013-05-500207

PMCID:: PMC3894493

Abstract Article

Select item 317805912.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

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