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Select item 109099791.

The protein tyrosine phosphatase PPH‐7 is required for fertility and embryonic development in C. elegans at elevated temperatures

Curdin A. Franziscus, Danilo Ritz, N. Constantin Kappel, Jachen A. Solinger, Alexander Schmidt, Anne Spang

FEBS Open Bio. 2024 Mar; 14(3): 390–409. Published online 2024 Feb 6. doi: 10.1002/2211-5463.13771

PMCID:: PMC10909979

Abstract Article PDF–12M

Select item 107635382.

Diversification of small RNA pathways underlies germline RNA interference incompetence in wild Caenorhabditis elegans strains

Han Ting Chou, Francisco Valencia, Jacqueline C Alexander, Avery Davis Bell, Diptodip Deb, Daniel A Pollard, Annalise B Paaby

Genetics. 2024 Jan; 226(1): iyad191. Published online 2023 Oct 22. doi: 10.1093/genetics/iyad191

PMCID:: PMC10763538

Abstract Article PDF–1.9M

Select item 106194803.

High-Temporal-Resolution smFISH Method for Gene Expression Studies in Caenorhabditis elegans Embryos

Seleipiri Charles, Guillaume Aubry, Han-Ting Chou, Annalise B. Paaby, Hang Lu

Anal Chem. Author manuscript; available in PMC 2023 Nov 1.

Published in final edited form as: Anal Chem. 2021 Jan 26; 93(3): 1369–1376. Published online 2020 Dec 23. doi: 10.1021/acs.analchem.0c02966

PMCID:: PMC10619480

Abstract Article PDF–1.2M

Select item 106158794.

Apical PAR protein caps orient the mitotic spindle in C. elegans early embryos

Naomi J. Stolpner, Nadia I. Manzi, Thomas Su, Daniel J. Dickinson

Curr Biol. Author manuscript; available in PMC 2024 Oct 23.

Published in final edited form as: Curr Biol. 2023 Oct 23; 33(20): 4312–4329.e6. Published online 2023 Sep 19. doi: 10.1016/j.cub.2023.08.069

PMCID:: PMC10615879

Abstract Article PDF–4.1M

Select item 104115955.

Beyond the reference: gene expression variation and transcriptional response to RNA interference in Caenorhabditis elegans

Avery Davis Bell, Han Ting Chou, Francisco Valencia, Annalise B Paaby

G3 (Bethesda) 2023 Aug; 13(8): jkad112. Published online 2023 May 23. doi: 10.1093/g3journal/jkad112

PMCID:: PMC10411595

Abstract Article PDF–404K

Select item 102388616.

Design principles for selective polarization of PAR proteins by cortical flows

Rukshala Illukkumbura, Nisha Hirani, Joana Borrego-Pinto, Tom Bland, KangBo Ng, Lars Hubatsch, Jessica McQuade, Robert G. Endres, Nathan W. Goehring

J Cell Biol. 2023 Aug 7; 222(8): e202209111. Published online 2023 Jun 2. doi: 10.1083/jcb.202209111

PMCID:: PMC10238861

Abstract Article PDF–5.7M

Select item 94454977.

SAIBR: a simple, platform-independent method for spectral autofluorescence correction

Nelio T. L. Rodrigues, Tom Bland, Joana Borrego-Pinto, KangBo Ng, Nisha Hirani, Ying Gu, Sherman Foo, Nathan W. Goehring

Development. 2022 Jul 15; 149(14): dev200545. Published online 2022 Jul 14. doi: 10.1242/dev.200545

PMCID:: PMC9445497

Abstract Article

Select item 94378488.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 91990759.

Stability selection enables robust learning of differential equations from limited noisy data

Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F. Sbalzarini, Christian L. Müller

Proc Math Phys Eng Sci. June 2022; 478(2262): 20210916. Published online June 15, 2022. doi: 10.1098/rspa.2021.0916

PMCID:: PMC9199075

Abstract Article PDF–1.9M

Select item 906207110.

Perspectives on Mechanisms Supporting Neuronal Polarity From Small Animals to Humans

Carlos Wilson, Ana Lis Moyano, Alfredo Cáceres

Front Cell Dev Biol. 2022; 10: 878142. Published online 2022 Apr 19. doi: 10.3389/fcell.2022.878142

PMCID:: PMC9062071

Abstract Article PDF–2.1M

Select item 844679311.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 833118312.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 804941113.

Interactions between the WEE-1.3 kinase and the PAM-1 aminopeptidase in oocyte maturation and the early C. elegans embryo

Dorothy Benton, Eva C Jaeger, Arielle Kilner, Ashley Kimble, Josh Lowry, Emily M Schleicher, Kaiden M Power, Danielle Uibel, Caprice Eisele, Bruce Bowerman, Rebecca Lyczak

G3 (Bethesda) 2021 Apr; 11(4): jkab063. Published online 2021 Mar 3. doi: 10.1093/g3journal/jkab063

PMCID:: PMC8049411

Abstract Article PDF–1.0M

Select item 799517614.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4