PMC Links for GEO Profiles (Select 57261007) - PMC

Select item 108029521.

Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly

Marcos Schaan Profes, Araven Tiroumalechetty, Neel Patel, Stephanie S. Lauar, Simone Sidoli, Peri T. Kurshan

PLoS Biol. 2024 Jan; 22(1): e3002466. Published online 2024 Jan 22. doi: 10.1371/journal.pbio.3002466

PMCID:: PMC10802952

Abstract Article PDF–2.7M

Select item 106176262.

SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans

Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino

Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755

PMCID:: PMC10617626

Abstract Article

Select item 99771493.

Genome sequencing of C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements

Tatiana Maroilley, Stephane Flibotte, Francesca Jean, Victoria Rodrigues Alves Barbosa, Andrew Galbraith, Afiya Razia Chida, Filip Cotra, Xiao Li, Larisa Oncea, Mark Edgley, Don Moerman, Maja Tarailo-Graovac

Genome Res. 2023 Jan; 33(1): 154–167. doi: 10.1101/gr.276988.122

PMCID:: PMC9977149

Abstract Article PDF–8.7M

Select item 83311834.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951765.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 77100236.

PLP-1 is essential for germ cell development and germline gene silencing in Caenorhabditiselegans

Rajaram Vishnupriya, Linitha Thomas, Lamia Wahba, Andrew Fire, Kuppuswamy Subramaniam

Development. 2020 Nov 15; 147(22): dev195578. Published online 2020 Nov 27. doi: 10.1242/dev.195578

PMCID:: PMC7710023

Abstract Article

Select item 76528267.

Roles for the RNA polymerase III regulator MAFR-1 in regulating sperm quality in Caenorhabditis elegans

Amy M. Hammerquist, Sean P. Curran

Sci Rep. 2020; 10: 19367. Published online 2020 Nov 9. doi: 10.1038/s41598-020-76423-5

PMCID:: PMC7652826

Abstract Article PDF–3.7M

Select item 64979378.

A complex containing the O-GlcNAc transferase OGT-1 and the ubiquitin ligase EEL-1 regulates GABA neuron function

Andrew C. Giles, Muriel Desbois, Karla J. Opperman, Rubens Tavora, Marissa J. Maroni, Brock Grill

J Biol Chem. 2019 Apr 26; 294(17): 6843–6856. Published online 2019 Mar 11. doi: 10.1074/jbc.RA119.007406

PMCID:: PMC6497937

Abstract Article PDF–3.2M

Select item 62165909.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 530527010.

β-Integrin de-phosphorylation by the Density-Enhanced Phosphatase DEP-1 attenuates EGFR signaling in C. elegans

Michael Walser, Christoph Alois Umbricht, Erika Fröhli, Paolo Nanni, Alex Hajnal

PLoS Genet. 2017 Jan; 13(1): e1006592. Published online 2017 Jan 30. doi: 10.1371/journal.pgen.1006592

PMCID:: PMC5305270

Abstract Article PDF–2.8M

Select item 498780811.

Cell size and fat content of dietary-restricted Caenorhabditis elegans are regulated by ATX-2, an mTOR repressor

Daniel Z. Bar, Chayki Charar, Jehudith Dorfman, Tam Yadid, Lionel Tafforeau, Denis L. J. Lafontaine, Yosef Gruenbaum

Proc Natl Acad Sci U S A. 2016 Aug 9; 113(32): E4620–E4629. Published online 2016 Jul 25. doi: 10.1073/pnas.1512156113

PMCID:: PMC4987808

Abstract Article PDF–2.0M

Select item 485894512.

In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics

Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach

Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975

PMCID:: PMC4858945

Abstract Article PDF–3.1M

Select item 422558313.

Mutations in PURA Cause Profound Neonatal Hypotonia, Seizures, and Encephalopathy in 5q31.3 Microdeletion Syndrome

Seema R. Lalani, Jing Zhang, Christian P. Schaaf, Chester W. Brown, Pilar Magoulas, Anne Chun-Hui Tsai, Areeg El-Gharbawy, Klaas J. Wierenga, Dennis Bartholomew, Chin-To Fong, Tina Barbaro-Dieber, Mary K. Kukolich, Lindsay C. Burrage, Elise Austin, Kory Keller, Matthew Pastore, Fabio Fernandez, Timothy Lotze, Angus Wilfong, Gabriela Purcarin, Wenmiao Zhu, William J. Craigen, Marianne McGuire, Mahim Jain, Erin Cooney, Mahshid Azamian, Matthew N. Bainbridge, Donna M. Muzny, Eric Boerwinkle, Richard E. Person, Zhiyv Niu, Christine M. Eng, James R. Lupski, Richard A. Gibbs, Arthur L. Beaudet, Yaping Yang, Meng C. Wang, Fan Xia

Am J Hum Genet. 2014 Nov 6; 95(5): 579–583. doi: 10.1016/j.ajhg.2014.09.014

PMCID:: PMC4225583

Abstract Article PDF–389K

Select item 336495714.

Genome-Wide Analysis of GLD-1–Mediated mRNA Regulation Suggests a Role in mRNA Storage

Claudia Scheckel, Dimos Gaidatzis, Jane E. Wright, Rafal Ciosk

PLoS Genet. 2012 May; 8(5): e1002742. Published online 2012 May 31. doi: 10.1371/journal.pgen.1002742

PMCID:: PMC3364957

Abstract Article PDF–1.8M

Select item 310207715.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 305792316.

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal

Nat Methods. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279

PMCID:: PMC3057923

Abstract Article PDF–3.0M

Select item 285392717.

C. elegans pur alpha, an activator of end-1, synergizes with the Wnt pathway to specify endoderm

Eric S. Witze, Erin D. Field, Donald F. Hunt, Joel H. Rothman

Dev Biol. Author manuscript; available in PMC 2010 Apr 13.

Published in final edited form as: Dev Biol. 2009 Mar 1; 327(1): 12–23. Published online 2008 Dec 3. doi: 10.1016/j.ydbio.2008.11.015

PMCID:: PMC2853927

Abstract Article PDF–2.6M

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