PMC Links for GEO Profiles (Select 57253168) - PMC

Select item 110623841.

A conserved requirement for RME-8/DNAJC13 in neuronal autophagic lysosome reformation

Sierra B. Swords, Nuo Jia, Anne Norris, Jil Modi, Qian Cai, Barth D. Grant

Autophagy. 2024; 20(4): 792–808. Published online 2023 Nov 9. doi: 10.1080/15548627.2023.2269028

PMCID:: PMC11062384

Select item 94378482.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 84467933.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83311834.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951765.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 62165906.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 45868387.

Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal

Anna Y. Zinovyeva, Isana Veksler-Lublinsky, Ajay A. Vashisht, James A. Wohlschlegel, Victor R. Ambros

Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38): E5271–E5280. Published online 2015 Sep 8. doi: 10.1073/pnas.1506576112

PMCID:: PMC4586838

Abstract Article PDF–1.1M

Select item 43591088.

NatB Domain-Containing CRA-1 Antagonizes Hydrolase ACER-1 Linking Acetyl-CoA Metabolism to the Initiation of Recombination during C. elegans Meiosis

Jinmin Gao, Hyun-Min Kim, Andrew E. Elia, Stephen J. Elledge, Monica P. Colaiácovo

PLoS Genet. 2015 Mar; 11(3): e1005029. Published online 2015 Mar 13. doi: 10.1371/journal.pgen.1005029

PMCID:: PMC4359108

Abstract Article PDF–22M

Select item 37181129.

Regulation of ubiquitin-dependent cargo sorting by multiple endocytic adaptors at the plasma membrane

Jonathan R. Mayers, Lei Wang, Jhuma Pramanik, Adam Johnson, Ali Sarkeshik, Yueju Wang, Witchuda Saengsawang, John R. Yates, III, Anjon Audhya

Proc Natl Acad Sci U S A. 2013 Jul 16; 110(29): 11857–11862. Published online 2013 Jul 1. doi: 10.1073/pnas.1302918110

PMCID:: PMC3718112

Abstract Article PDF–907K

Select item 367897210.

ENDOCYTOSIS GENES FACILITATE PROTEIN AND MEMBRANE TRANSPORT IN C. ELEGANS SENSORY CILIA

Oktay I. Kaplan, David B. Doroquez, Sebiha Cevik, Rachel V. Bowie, Lara Clarke, Anna A.W.M. Sanders, Katarzyna Kida, Joshua Z. Rappoport, Piali Sengupta, Oliver E. Blacque

Curr Biol. Author manuscript; available in PMC 2013 Jun 11.

Published in final edited form as: Curr Biol. 2012 Mar 20; 22(6): 451–460. Published online 2012 Feb 16. doi: 10.1016/j.cub.2012.01.060

PMCID:: PMC3678972

Abstract Article PDF–4.5M

Select item 310207711.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 305792312.

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal

Nat Methods. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279

PMCID:: PMC3057923

Abstract Article PDF–3.0M

Select item 301313313.

RNAi Screen of DAF-16/FOXO Target Genes in C. elegans Links Pathogenesis and Dauer Formation

Victor L. Jensen, Karina T. Simonsen, Yu-Hui Lee, Donha Park, Donald L. Riddle

PLoS One. 2010; 5(12): e15902. Published online 2010 Dec 31. doi: 10.1371/journal.pone.0015902

PMCID:: PMC3013133

Abstract Article PDF–178K

Select item 285154914.

A novel pathway for phagosome maturation during engulfment of apoptotic cells

Jason M. Kinchen, Kimon Doukoumetzidis, Johann Almendinger, Lilli Stergiou, Annie Tosello-Trampont, Costi D. Sifri, Michael O. Hengartner, Kodi S. Ravichandran

Nat Cell Biol. Author manuscript; available in PMC 2010 Apr 8.

Published in final edited form as: Nat Cell Biol. 2008 May; 10(5): 556–566. Published online 2008 Apr 20. doi: 10.1038/ncb1718

PMCID:: PMC2851549

Abstract Article PDF–5.7M

Select item 277610515.

Regulation of endosomal clathrin and retromer-mediated endosome to Golgi retrograde transport by the J-domain protein RME-8

Anbing Shi, Lin Sun, Riju Banerjee, Michael Tobin, Yinhua Zhang, Barth D Grant

EMBO J. 2009 Nov 4; 28(21): 3290–3302. Published online 2009 Sep 17. doi: 10.1038/emboj.2009.272

PMCID:: PMC2776105

Abstract Article PDF–1.9M

Select item 178344516.

Caenorhabditis elegans SAND-1 is essential for RAB-7 function in endosomal traffic

Dmitry Poteryaev, Hanna Fares, Bruce Bowerman, Anne Spang

EMBO J. 2007 Jan 24; 26(2): 301–312. Published online 2007 Jan 4. doi: 10.1038/sj.emboj.7601498

PMCID:: PMC1783445

Abstract Article PDF–582K

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