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Select item 93079941.

Developmental and evolutionary comparative analysis of a regulatory landscape in mouse and chicken

Aurélie Hintermann, Isabel Guerreiro, Lucille Lopez-Delisle, Christopher Chase Bolt, Sandra Gitto, Denis Duboule, Leonardo Beccari

Development. 2022 Jun 15; 149(12): dev200594. Published online 2022 Jun 30. doi: 10.1242/dev.200594

PMCID:: PMC9307994

Abstract Article

Select item 85596742.

Sequential in cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse HoxD cluster

Ana Rita Amândio, Leonardo Beccari, Lucille Lopez-Delisle, Bénédicte Mascrez, Jozsef Zakany, Sandra Gitto, Denis Duboule

Genes Dev. 2021 Nov 1; 35(21-22): 1490–1509. doi: 10.1101/gad.348934.121

PMCID:: PMC8559674

Abstract Article PDF–22M

Select item 77338573.

Chromatin topology and the timing of enhancer function at the HoxD locus

Eddie Rodríguez-Carballo, Lucille Lopez-Delisle, Andréa Willemin, Leonardo Beccari, Sandra Gitto, Bénédicte Mascrez, Denis Duboule

Proc Natl Acad Sci U S A. 2020 Dec 8; 117(49): 31231–31241. Published online 2020 Nov 23. doi: 10.1073/pnas.2015083117

PMCID:: PMC7733857

Abstract Article PDF–2.5M

Select item 77046664.

Lysine demethylase 7a regulates murine anterior-posterior development by modulating the transcription of Hox gene cluster

Yoshiki Higashijima, Nao Nagai, Masamichi Yamamoto, Taro Kitazawa, Yumiko K. Kawamura, Akashi Taguchi, Natsuko Nakada, Masaomi Nangaku, Tetsushi Furukawa, Hiroyuki Aburatani, Hiroki Kurihara, Youichiro Wada, Yasuharu Kanki

Commun Biol. 2020; 3: 725. Published online 2020 Nov 30. doi: 10.1038/s42003-020-01456-5

PMCID:: PMC7704666

Abstract Article PDF–1.3M

Select item 72599515.

Lin28a/let-7 pathway modulates the Hox code via Polycomb regulation during axial patterning in vertebrates

Tempei Sato, Kensuke Kataoka, Yoshiaki Ito, Shigetoshi Yokoyama, Masafumi Inui, Masaki Mori, Satoru Takahashi, Keiichi Akita, Shuji Takada, Hiroe Ueno-Kudoh, Hiroshi Asahara

eLife. 2020; 9: e53608. Published online 2020 May 29. doi: 10.7554/eLife.53608

PMCID:: PMC7259951

Abstract Article PDF–5.5M

Select item 69694976.

The formation of the thumb requires direct modulation of Gli3 transcription by Hoxa13

Maria Félix Bastida, Rocío Pérez-Gómez, Anna Trofka, Jianjian Zhu, Alvaro Rada-Iglesias, Rushikesh Sheth, H. Scott Stadler, Susan Mackem, Marian A. Ros

Proc Natl Acad Sci U S A. 2020 Jan 14; 117(2): 1090–1096. Published online 2020 Jan 2. doi: 10.1073/pnas.1919470117

PMCID:: PMC6969497

Abstract Article PDF–1.1M

Select item 67242217.

The emergent landscape of the mouse gut endoderm at single-cell resolution

Sonja Nowotschin, Manu Setty, Ying-Yi Kuo, Vincent Liu, Vidur Garg, Roshan Sharma, Claire S. Simon, Nestor Saiz, Rui Gardner, Stéphane C. Boutet, Deanna M. Church, Pamela A. Hoodless, Anna-Katerina Hadjantonakis, Dana Pe’er

Nature. Author manuscript; available in PMC 2019 Nov 1.

Published in final edited form as: Nature. 2019 May; 569(7756): 361–367. Published online 2019 Apr 8. doi: 10.1038/s41586-019-1127-1

PMCID:: PMC6724221

Abstract Article PDF–6.5M

Select item 66263648.

Impact of genome architecture on the functional activation and repression of Hox regulatory landscapes

Eddie Rodríguez-Carballo, Lucille Lopez-Delisle, Nayuta Yakushiji-Kaminatsui, Asier Ullate-Agote, Denis Duboule

BMC Biol. 2019; 17: 55. Published online 2019 Jul 12. doi: 10.1186/s12915-019-0677-x

PMCID:: PMC6626364

Abstract Article PDF–1.9M

Select item 63813889.

Transcription and Signaling Regulators in Developing Neuronal Subtypes of Mouse and Human Enteric Nervous System

Fatima Memic, Viktoria Knoflach, Khomgrit Morarach, Rebecca Sadler, Catia Laranjeira, Jens Hjerling-Leffler, Erik Sundström, Vassilis Pachnis, Ulrika Marklund

Gastroenterology. 2018 Feb; 154(3): 624–636. doi: 10.1053/j.gastro.2017.10.005

PMCID:: PMC6381388

Abstract Article

Select item 618713110.

Corepressor SMRT is required to maintain Hox transcriptional memory during somitogenesis

Suk-Hyun Hong, Sungsoon Fang, Benson C. Lu, Russell Nofsinger, Yasuhiko Kawakami, Glenda L. Castro, Yunqiang Yin, Chengqi Lin, Ruth T. Yu, Michael Downes, Juan Carlos Izpisúa Belmonte, Ali Shilatifard, Ronald M. Evans

Proc Natl Acad Sci U S A. 2018 Oct 9; 115(41): 10381–10386. Published online 2018 Sep 25. doi: 10.1073/pnas.1809480115

PMCID:: PMC6187131

Abstract Article PDF–1.3M

Select item 576977011.

The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

Eddie Rodríguez-Carballo, Lucille Lopez-Delisle, Ye Zhan, Pierre J. Fabre, Leonardo Beccari, Imane El-Idrissi, Thi Hanh Nguyen Huynh, Hakan Ozadam, Job Dekker, Denis Duboule

Genes Dev. 2017 Nov 15; 31(22): 2264–2281. doi: 10.1101/gad.307769.117

PMCID:: PMC5769770

Abstract Article PDF–14M

Select item 569771812.

Distal Limb Patterning Requires Modulation of cis-Regulatory Activities by HOX13

Rushikesh Sheth, Iros Barozzi, David Langlais, Marco Osterwalder, Stephen Nemec, Hanqian L. Carlson, H. Scott Stadler, Axel Visel, Jacques Drouin, Marie Kmita

Cell Rep. Author manuscript; available in PMC 2017 Nov 21.

Published in final edited form as: Cell Rep. 2016 Dec 13; 17(11): 2913–2926. doi: 10.1016/j.celrep.2016.11.039

PMCID:: PMC5697718

Abstract Article PDF–2.2M

Select item 567692613.

Control of growth and gut maturation by HoxD genes and the associated lncRNA Haglr

Jozsef Zakany, Fabrice Darbellay, Bénédicte Mascrez, Anamaria Necsulea, Denis Duboule

Proc Natl Acad Sci U S A. 2017 Oct 31; 114(44): E9290–E9299. Published online 2017 Oct 17. doi: 10.1073/pnas.1712511114

PMCID:: PMC5676926

Abstract Article PDF–2.1M

Select item 513771514.

Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape

Ruben Schep, Anamaria Necsulea, Eddie Rodríguez-Carballo, Isabel Guerreiro, Guillaume Andrey, Thi Hanh Nguyen Huynh, Virginie Marcet, Jozsef Zákány, Denis Duboule, Leonardo Beccari

Proc Natl Acad Sci U S A. 2016 Nov 29; 113(48): E7720–E7729. Published online 2016 Nov 15. doi: 10.1073/pnas.1617141113

PMCID:: PMC5137715

Abstract Article PDF–1.4M

Select item 496903715.

Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan

Isabel Guerreiro, Sandra Gitto, Ana Novoa, Julien Codourey, Thi Hanh Nguyen Huynh, Federico Gonzalez, Michel C Milinkovitch, Moises Mallo, Denis Duboule

eLife. 2016; 5: e16087. Published online 2016 Aug 1. doi: 10.7554/eLife.16087

PMCID:: PMC4969037

Abstract Article PDF–2.3M

Select item 448267216.

“Self-Regulation,” A New Facet of Hox Genes’ Function

Rushikesh Sheth, Maria Félix Bastida, Marie Kmita, Marian Ros

Dev Dyn. Author manuscript; available in PMC 2015 Jun 26.

Published in final edited form as: Dev Dyn. 2014 Jan; 243(1): 182–191. Published online 2013 Sep 2. doi: 10.1002/dvdy.24019

PMCID:: PMC4482672

Abstract Article PDF–1.0M

Select item 448266617.

Rostral and caudal pharyngeal arches share a common neural crest ground pattern

Maryline Minoux, Gregory S. Antonarakis, Marie Kmita, Denis Duboule, Filippo M. Rijli

Development. Author manuscript; available in PMC 2015 Jun 26.

Published in final edited form as: Development. 2009 Feb; 136(4): 637–645. doi: 10.1242/dev.028621

PMCID:: PMC4482666

Abstract Article PDF–1.5M

Select item 431955918.

A high resolution spatiotemporal atlas of gene expression of the developing mouse brain

Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones

Neuron. Author manuscript; available in PMC 2015 Jul 16.

Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033

PMCID:: PMC4319559

Abstract Article PDF–3.0M

Select item 425236419.

Mesodermal expression of integrin α5β1 regulates neural crest development and cardiovascular morphogenesis

Dong Liang, Xia Wang, Ashok Mittal, Sonam Dhiman, Shuan-Yu Hou, Karl Degenhardt, Sophie Astrof

Dev Biol. Author manuscript; available in PMC 2015 Nov 15.

Published in final edited form as: Dev Biol. 2014 Nov 15; 395(2): 232–244. Published online 2014 Sep 19. doi: 10.1016/j.ydbio.2014.09.014

PMCID:: PMC4252364

Abstract Article PDF–1.8M

Select item 417775220.

Nipbl and Mediator Cooperatively Regulate Gene Expression to Control Limb Development

Akihiko Muto, Shingo Ikeda, Martha E. Lopez-Burks, Yutaka Kikuchi, Anne L. Calof, Arthur D. Lander, Thomas F. Schilling

PLoS Genet. 2014 Sep; 10(9): e1004671. Published online 2014 Sep 25. doi: 10.1371/journal.pgen.1004671

PMCID:: PMC4177752

Abstract Article PDF–2.1M

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