PMC Links for GEO Profiles (Select 5389350) - PMC

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Items: 15

Select item 72970451.

A pan-plant protein complex map reveals deep conservation and novel assemblies

Claire D. McWhite, Ophelia Papoulas, Kevin Drew, Rachael M. Cox, Viviana June, Oliver Xiaoou Dong, Taejoon Kwon, Cuihong Wan, Mari L. Salmi, Stanley J. Roux, Jr., Karen S. Browning, Z. Jeffrey Chen, Pamela C. Ronald, Edward M. Marcotte

Cell. Author manuscript; available in PMC 2021 Apr 16.

Published in final edited form as: Cell. 2020 Apr 16; 181(2): 460–474.e14. Published online 2020 Mar 18. doi: 10.1016/j.cell.2020.02.049

PMCID:: PMC7297045

Abstract Article PDF–4.0M

Select item 51320692.

The role of DNA (de)methylation in immune responsiveness of Arabidopsis

Ana López Sánchez, Joost H.M. Stassen, Leonardo Furci, Lisa M. Smith, Jurriaan Ton

Plant J. 2016 Nov; 88(3): 361–374. Published online 2016 Sep 7. doi: 10.1111/tpj.13252

PMCID:: PMC5132069

Abstract Article PDF–847K

Select item 43118293.

DOMAINS REARRANGED METHYLTRANSFERASE3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis

Xuehua Zhong, Christopher J. Hale, Minh Nguyen, Israel Ausin, Martin Groth, Jonathan Hetzel, Ajay A. Vashisht, Ian R. Henderson, James A. Wohlschlegel, Steven E. Jacobsen

Proc Natl Acad Sci U S A. 2015 Jan 20; 112(3): 911–916. Published online 2015 Jan 5. doi: 10.1073/pnas.1423603112

PMCID:: PMC4311829

Abstract Article PDF–847K

Select item 42603544.

SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis

Yong-Feng Han, Kun Dou, Ze-Yang Ma, Su-Wei Zhang, Huan-Wei Huang, Lin Li, Tao Cai, She Chen, Jian-Kang Zhu, Xin-Jian He

Cell Res. 2014 Dec; 24(12): 1445–1465. Published online 2014 Nov 25. doi: 10.1038/cr.2014.156

PMCID:: PMC4260354

Abstract Article PDF–3.6M

Select item 34433145.

DDR complex facilitates global association of RNA Polymerase V to promoters and evolutionarily young transposons

Xuehua Zhong, Christopher J. Hale, Julie A. Law, Lianna M. Johnson, Suhua Feng, Andy Tu, Steven E. Jacobsen

Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Mar 1.

Published in final edited form as: Nat Struct Mol Biol. 2012 Sep; 19(9): 870–875. Published online 2012 Aug 5. doi: 10.1038/nsmb.2354

PMCID:: PMC3443314

Abstract Article PDF–1.9M

Select item 33788756.

A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation

Meng Xie, Guodong Ren, Pedro Costa-Nunes, Olga Pontes, Bin Yu

Nucleic Acids Res. 2012 May; 40(10): 4422–4431. Published online 2012 Jan 2. doi: 10.1093/nar/gks034

PMCID:: PMC3378875

Abstract Article PDF–4.0M

Select item 32043267.

DRD1-Pol V-dependent self-silencing of an exogenous silencer restricts non-cell-autonomous silencing of an endogenous target gene

Li Dong, Meng Liu, Yuan-Yuan Fang, Jian-Hua Zhao, Xiang-Feng He, Xiao-Bao Ying, Yi-Yue Zhang, Qi Xie, Nam-Hai Chua, Hui-Shan Guo

Plant J. Author manuscript; available in PMC 2012 Nov 1.

Published in final edited form as: Plant J. 2011 Nov; 68(4): 633–645. Published online 2011 Aug 30. doi: 10.1111/j.1365-313X.2011.04714.x

PMCID:: PMC3204326

Abstract Article PDF–1.8M

Select item 29727048.

A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in plants

Julie A. Law, Israel Ausin, Lianna M. Johnson, Ajay A. Vashisht, Jian-Kang Zhu, James A. Wohlschlegel, Steven E. Jacobsen

Curr Biol. Author manuscript; available in PMC 2010 Nov 4.

Published in final edited form as: Curr Biol. 2010 May 25; 20(10): 951–956. Published online 2010 Apr 22. doi: 10.1016/j.cub.2010.03.062

PMCID:: PMC2972704

Abstract Article PDF–509K

Select item 29468239.

Subunit Compositions of the RNA-Silencing Enzymes PoI IV and PoI V Reveal Their Origins as Specialized Forms of RNA Polymerase II

Thomas S. Ream, Jeremy R. Haag, Andrzej T. Wierzbicki, Carrie D. Nicora, Angela Norbeck, Jian-Kang Zhu, Gretchen Hagen, Thomas J. Guilfoyle, Ljiljana Paša-Tolić, Craig S. Pikaard

Mol Cell. Author manuscript; available in PMC 2010 Sep 28.

Published in final edited form as: Mol Cell. 2009 Jan 30; 33(2): 192–203. Published online 2008 Dec 24. doi: 10.1016/j.molcel.2008.12.015

PMCID:: PMC2946823

Abstract Article PDF–7.0M

Select item 270082410.

An effector of RNA-directed DNA methylation in Arabidopsis is an ARGONAUTE 4- and RNA-binding protein

Xin-Jian He, Yi-Feng Hsu, Shihua Zhu, Andrzej T. Wierzbicki, Olga Pontes, Craig S. Pikaard, Hai-Liang Liu, Co-Shine Wang, Hailing Jin, Jian-Kang Zhu

Cell. Author manuscript; available in PMC 2010 May 1.

Published in final edited form as: Cell. 2009 May 1; 137(3): 498–508. doi: 10.1016/j.cell.2009.04.028

PMCID:: PMC2700824

Abstract Article PDF–3.2M

Select item 264854711.

NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation

Xin-Jian He, Yi-Feng Hsu, Olga Pontes, Jianhua Zhu, Jian Lu, Ray A. Bressan, Craig Pikaard, Co-Shine Wang, Jian-Kang Zhu

Genes Dev. 2009 Feb 1; 23(3): 318–330. doi: 10.1101/gad.1765209

PMCID:: PMC2648547

Abstract Article PDF–1.4M

Select item 263009612.

PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit

Sylvie Lahmy, Dominique Pontier, Emilie Cavel, Danielle Vega, Mahmoud El-Shami, Tatsuo Kanno, Thierry Lagrange

Proc Natl Acad Sci U S A. 2009 Jan 20; 106(3): 941–946. Published online 2009 Jan 13. doi: 10.1073/pnas.0810310106

PMCID:: PMC2630096

Abstract Article PDF–1.0M

Select item 226859913.

PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

Rebecca A. Mosher, Frank Schwach, David Studholme, David C. Baulcombe

Proc Natl Acad Sci U S A. 2008 Feb 26; 105(8): 3145–3150. Published online 2008 Feb 19. doi: 10.1073/pnas.0709632105

PMCID:: PMC2268599

Abstract Article PDF–683K

Select item 200031914.

Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components

Mahmoud El-Shami, Dominique Pontier, Sylvie Lahmy, Laurence Braun, Claire Picart, Danielle Vega, Mohamed-Ali Hakimi, Steven E. Jacobsen, Richard Cooke, Thierry Lagrange

Genes Dev. 2007 Oct 15; 21(20): 2539–2544. doi: 10.1101/gad.451207

PMCID:: PMC2000319

Abstract Article PDF–420K

Select item 119957315.

Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis

Dominique Pontier, Galina Yahubyan, Danielle Vega, Agnès Bulski, Julio Saez-Vasquez, Mohamed-Ali Hakimi, Silva Lerbs-Mache, Vincent Colot, Thierry Lagrange

Genes Dev. 2005 Sep 1; 19(17): 2030–2040. doi: 10.1101/gad.348405