PMC Links for GEO Profiles (Select 53801286) - PMC

Select item 110353701.

B cell somatic hypermutation following COVID-19 vaccination with Ad26.COV2.S

Catherine Jacob-Dolan, Michelle Lifton, Olivia C. Powers, Jessica Miller, Nicole P. Hachmann, Mya Vu, Nehalee Surve, Camille R. Mazurek, Jana L. Fisher, Stefanie Rodrigues, Robert C. Patio, Trisha Anand, Mathieu Le Gars, Jerald Sadoff, Aaron G. Schmidt, Dan H. Barouch

iScience. 2024 May 17; 27(5): 109716. Published online 2024 Apr 9. doi: 10.1016/j.isci.2024.109716

PMCID:: PMC11035370

Abstract Article PDF–1.2M

Select item 104282032.

Analysis of Plasmablasts From Children With Kawasaki Disease Reveals Evidence of a Convergent Antibody Response to a Specific Protein Epitope

Anne H Rowley, David Arrollo, Stanford T Shulman, Abigail Torres, Amornrat O’Brien, Kristine Wylie, Kwang-Youn A Kim, Susan C Baker

J Infect Dis. 2023 Aug 15; 228(4): 412–421. Published online 2023 Feb 18. doi: 10.1093/infdis/jiad048

PMCID:: PMC10428203

Abstract Article PDF–932K

Select item 96316113.

Production and Characterization of Human Monoclonal Antibody Fab Fragments to Vaccinia Virus from a Phage-Display Combinatorial Library

Connie Schmaljohn, Yunchang Cui, Stephen Kerby, David Pennock, Kristin Spik

Virology. 1999 May 25; 258(1): 189–200. Published online 2002 May 25. doi: 10.1006/viro.1999.9701

PMCID:: PMC9631611

Abstract Article PDF–408K

Select item 89397684.

SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies

S. Momsen Reincke, Meng Yuan, Hans-Christian Kornau, Victor M. Corman, Scott van Hoof, Elisa Sánchez-Sendin, Melanie Ramberger, Wenli Yu, Yuanzi Hua, Henry Tien, Marie Luisa Schmidt, Tatjana Schwarz, Lara Maria Jeworowski, Sarah E. Brandl, Helle Foverskov Rasmussen, Marie A. Homeyer, Laura Stöffler, Martin Barner, Désirée Kunkel, Shufan Huo, Johannes Horler, Niels von Wardenburg, Inge Kroidl, Tabea M. Eser, Andreas Wieser, Christof Geldmacher, Michael Hoelscher, Hannes Gänzer, Günter Weiss, Dietmar Schmitz, Christian Drosten, Harald Prüss, Ian A. Wilson, Jakob Kreye

Science. 2022 Jan 25 : eabm5835. Published online 2022 Jan 25. doi: 10.1126/science.abm5835

PMCID:: PMC8939768

Abstract Article PDF–1.2M

Select item 89353945.

SARS-CoV-2 mRNA vaccines induce persistent human germinal centre responses

Jackson S. Turner, Jane A. O’Halloran, Elizaveta Kalaidina, Wooseob Kim, Aaron J. Schmitz, Julian Q. Zhou, Tingting Lei, Mahima Thapa, Rita E. Chen, James Brett Case, Fatima Amanat, Adriana M. Rauseo, Alem Haile, Xuping Xie, Michael K. Klebert, Teresa Suessen, William D. Middleton, Pei-Yong Shi, Florian Krammer, Sharlene A. Teefey, Michael S. Diamond, Rachel M. Presti, Ali H. Ellebedy

Nature. Author manuscript; available in PMC 2022 Mar 21.

Published in final edited form as: Nature. 2021 Aug; 596(7870): 109–113. Published online 2021 Jun 28. doi: 10.1038/s41586-021-03738-2

PMCID:: PMC8935394

Abstract Article PDF–1.4M

Select item 75727936.

A potent anti-malarial human monoclonal antibody targets circumsporozoite protein minor repeats and neutralizes sporozoites in the liver

Lawrence T. Wang, Lais S. Pereira, Yevel Flores-Garcia, James O’Connor, Barbara J. Flynn, Arne Schön, Nicholas K. Hurlburt, Marlon Dillon, Annie S.P. Yang, Amanda Fabra-García, Azza H. Idris, Bryan T. Mayer, Monica W. Gerber, Raphael Gottardo, Rosemarie D. Mason, Nicole Cavett, Reid B. Ballard, Neville K. Kisalu, Alvaro Molina-Cruz, Jorgen Nelson, Rachel Vistein, Carolina Barillas-Mury, Rogerio Amino, David Baker, Neil P. King, Robert W. Sauerwein, Marie Pancera, Ian A. Cockburn, Fidel Zavala, Joseph R. Francica, Robert A. Seder

Immunity. Author manuscript; available in PMC 2021 Oct 13.

Published in final edited form as: Immunity. 2020 Oct 13; 53(4): 733–744.e8. Published online 2020 Sep 17. doi: 10.1016/j.immuni.2020.08.014

PMCID:: PMC7572793

Abstract Article PDF–1.5M

Select item 72635627.

Rapid isolation and profiling of a diverse panel of human monoclonal antibodies targeting the SARS-CoV-2 spike protein

Seth J. Zost, Pavlo Gilchuk, Rita E. Chen, James Brett Case, Joseph X. Reidy, Andrew Trivette, Rachel S. Nargi, Rachel E. Sutton, Naveenchandra Suryadevara, Elaine C. Chen, Elad Binshtein, Swathi Shrihari, Mario Ostrowski, Helen Y. Chu, Jonathan E. Didier, Keith W. MacRenaris, Taylor Jones, Samuel Day, Luke Myers, F. Eun-Hyung Lee, Doan C. Nguyen, Ignacio Sanz, David R. Martinez, Ralph S. Baric, Larissa B. Thackray, Michael S. Diamond, Robert H. Carnahan, James E. Crowe

Version 1. bioRxiv. Preprint. 2020 May 13. doi: 10.1101/2020.05.12.091462

Published in:: Nat Med. 2020 Sep; 26(9): 1422–1427.

PMCID:: PMC7263562

Abstract Article

Select item 71042968.

Longitudinal dynamics of the human B cell response to the yellow fever 17D vaccine

Anna Z. Wec, Denise Haslwanter, Yasmina N. Abdiche, Laila Shehata, Nuria Pedreño-Lopez, Crystal L. Moyer, Zachary A. Bornholdt, Asparouh Lilov, Juergen H. Nett, Rohit K. Jangra, Michael Brown, David I. Watkins, Clas Ahlm, Mattias N. Forsell, Félix A. Rey, Giovanna Barba-Spaeth, Kartik Chandran, Laura M. Walker

Proc Natl Acad Sci U S A. 2020 Mar 24; 117(12): 6675–6685. Published online 2020 Mar 9. doi: 10.1073/pnas.1921388117

PMCID:: PMC7104296

Abstract Article PDF–1.2M

Select item 69089689.

Longitudinal Analysis of the Human B Cell Response to Ebola Virus Infection

Carl W. Davis, Katherine J.L. Jackson, Anita K. McElroy, Peter Halfmann, Jessica Huang, Chakravarthy Chennareddy, Ashley E. Piper, Yvonne Leung, César G. Albariño, Ian Crozier, Ali H. Ellebedy, John Sidney, Alessandro Sette, Tianwei Yu, Sandra C.A. Nielsen, Arthur J. Goff, Christina F. Spiropoulou, Erica Ollman Saphire, Guy Cavet, Yoshihiro Kawaoka, Aneesh K. Mehta, Pamela J. Glass, Scott D. Boyd, Rafi Ahmed

Cell. 2019 May 30; 177(6): 1566–1582.e17. doi: 10.1016/j.cell.2019.04.036

PMCID:: PMC6908968

Abstract Article

Select item 671374710.

Exposure of an occluded hemagglutinin epitope drives selection of a class of cross-protective influenza antibodies

Yu Adachi, Keisuke Tonouchi, Arnone Nithichanon, Masayuki Kuraoka, Akiko Watanabe, Ryo Shinnakasu, Hideki Asanuma, Akira Ainai, Yusuke Ohmi, Takuya Yamamoto, Ken J. Ishii, Hideki Hasegawa, Haruko Takeyama, Ganjana Lertmemongkolchai, Tomohiro Kurosaki, Manabu Ato, Garnett Kelsoe, Yoshimasa Takahashi

Nat Commun. 2019; 10: 3883. Published online 2019 Aug 28. doi: 10.1038/s41467-019-11821-6

PMCID:: PMC6713747

Abstract Article PDF–1.8M

Select item 607367011.

Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta

Marta Majewska, Aleksandra Lipka, Lukasz Paukszto, Jan Pawel Jastrzebski, Marek Gowkielewicz, Marcin Jozwik, Mariusz Krzysztof Majewski

Int J Mol Sci. 2018 Jul; 19(7): 1894. Published online 2018 Jun 27. doi: 10.3390/ijms19071894

PMCID:: PMC6073670

Abstract Article PDF–3.6M

Select item 456010512.

Barcode-Enabled Sequencing of Plasmablast Antibody Repertoires in Rheumatoid Arthritis

Yann-Chong Tan, Sarah Kongpachith, Lisa K. Blum, Chia-Hsin Ju, Lauren J. Lahey, Dan R. Lu, Xiaoyong Cai, Catriona A. Wagner, Tamsin M. Lindstrom, Jeremy Sokolove, William H. Robinson

Arthritis Rheumatol. Author manuscript; available in PMC 2015 Oct 1.

Published in final edited form as: Arthritis Rheumatol. 2014 Oct; 66(10): 2706–2715. doi: 10.1002/art.38754

PMCID:: PMC4560105

Abstract Article PDF–1.5M

Select item 446150813.

A Broad Range of Mutations in HIV-1 Neutralizing Human Monoclonal Antibodies Specific for V2, V3, and the CD4 Binding Site

Liuzhe Li, Xiao-Hong Wang, Constance Williams, Barbara Volsky, Olivia Steczko, Michael S. Seaman, Kalpana Luthra, Phillipe Nyambi, Arthur Nadas, Véronique Giudicelli, Marie-Paule Lefranc, Susan Zolla-Pazner, Miroslaw K. Gorny

Mol Immunol. Author manuscript; available in PMC 2016 Aug 1.

Published in final edited form as: Mol Immunol. 2015 Aug; 66(2): 364–374. Published online 2015 May 18. doi: 10.1016/j.molimm.2015.04.011

PMCID:: PMC4461508

Abstract Article PDF–2.9M

Select item 439500714.

Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies

Nicole A. Doria-Rose, Chaim A. Schramm, Jason Gorman, Penny L. Moore, Jinal N. Bhiman, Brandon J. DeKosky, Michael J. Ernandes, Ivelin S. Georgiev, Helen J. Kim, Marie Pancera, Ryan P. Staupe, Han R. Altae-Tran, Robert T. Bailer, Ema T. Crooks, Albert Cupo, Aliaksandr Druz, Nigel J. Garrett, Kam H. Hoi, Rui Kong, Mark K. Louder, Nancy S. Longo, Krisha McKee, Molati Nonyane, Sijy O’Dell, Ryan S. Roark, Rebecca S. Rudicell, Stephen D. Schmidt, Daniel J. Sheward, Cinque Soto, Constantinos Kurt Wibmer, Yongping Yang, Zhenhai Zhang, NISC Comparative Sequencing Program, James C. Mullikin, James M. Binley, Rogier W. Sanders, Ian A. Wilson, John P. Moore, Andrew B. Ward, George Georgiou, Carolyn Williamson, Salim S. Abdool Karim, Lynn Morris, Peter D. Kwong, Lawrence Shapiro, John R. Mascola

Nature. Author manuscript; available in PMC 2015 Apr 13.

Published in final edited form as: Nature. 2014 May 1; 509(7498): 55–62. Published online 2014 Mar 2. doi: 10.1038/nature13036

PMCID:: PMC4395007

Abstract Article PDF–6.6M

Select item 148903715.

Isolation and Characterization of Human Monoclonal Antibodies from Individuals Infected with West Nile Virus

Mark Throsby, Cecile Geuijen, Jaap Goudsmit, Arjen Q. Bakker, Jehanara Korimbocus, R. Arjen Kramer, Marieke Clijsters-van der Horst, Maureen de Jong, Mandy Jongeneelen, Sandra Thijsse, Renate Smit, Therese J. Visser, Nora Bijl, Wilfred E. Marissen, Mark Loeb, David J. Kelvin, Wolfgang Preiser, Jan ter Meulen, John de Kruif

J Virol. 2006 Jul; 80(14): 6982–6992. doi: 10.1128/JVI.00551-06

PMCID:: PMC1489037

Abstract Article PDF–557K

Select item 135612916.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406

PMCID:: PMC1356129

Abstract Article PDF–438K

Select item 15526617.

Human Paralogs of KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms

Moira Crosier, Luigi Viggiano, Jane Guy, Doriana Misceo, Robert Stones, Wenbin Wei, Tom Hearn, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Michael S. Jackson

Genome Res. 2002 Jan; 12(1): 67–80. doi: 10.1101/gr.213702

PMCID:: PMC155266

Abstract Article PDF–1.0M

Select item 13924118.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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