PMC Links for GEO Profiles (Select 5319402) - PMC

Bumsik Cho, Sang-Ho Yoon, Daewon Lee, Ferdinand Koranteng, Sudhir Gopal Tattikota, Nuri Cha, Mingyu Shin, Hobin Do, Yanhui Hu, Sue Young Oh, Daehan Lee, A. Vipin Menon, Seok Jun Moon, Norbert Perrimon, Jin-Wu Nam, Jiwon Shim

Nat Commun. 2020; 11: 4483. Published online 2020 Sep 8. doi: 10.1038/s41467-020-18135-y

PMCID:: PMC7479620

Abstract Article PDF–11M

Select item 70503964.

Druggable genome screen identifies new regulators of the abundance and toxicity of ATXN3, the Spinocerebellar Ataxia Type 3 disease protein

Naila S. Ashraf, Joanna R. Sutton, Yemen Yang, Bedri Ranxhi, Kozeta Libohova, Emily D. Shaw, Anna J. Barget, Sokol V. Todi, Henry L. Paulson, Maria do Carmo Costa

Neurobiol Dis. Author manuscript; available in PMC 2020 Apr 1.

Published in final edited form as: Neurobiol Dis. 2020 Apr; 137: 104697. Published online 2019 Nov 26. doi: 10.1016/j.nbd.2019.104697

PMCID:: PMC7050396

Abstract Article PDF–2.7M

Select item 69615785.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 68474876.

Phosphorylation of Drosophila CENP-A on serine 20 regulates protein turn-over and centromere-specific loading

Anming Huang, Leopold Kremser, Fabian Schuler, Doris Wilflingseder, Herbert Lindner, Stephan Geley, Alexandra Lusser

Nucleic Acids Res. 2019 Nov 18; 47(20): 10754–10770. Published online 2019 Sep 19. doi: 10.1093/nar/gkz809

PMCID:: PMC6847487

Abstract Article PDF–20M

Select item 64728297.

Identification of evolutionarily conserved downstream core promoter elements required for the transcriptional regulation of Fushi tarazu target genes

Hila Shir-Shapira, Anna Sloutskin, Orit Adato, Avital Ovadia-Shochat, Diana Ideses, Yonathan Zehavi, George Kassavetis, James T. Kadonaga, Ron Unger, Tamar Juven-Gershon

PLoS One. 2019; 14(4): e0215695. Published online 2019 Apr 18. doi: 10.1371/journal.pone.0215695

PMCID:: PMC6472829

Abstract Article PDF–1.6M

Select item 64682458.

The E3-ligases SCF^Ppa and APC/C^Cdh1 co-operate to regulate CENP-A^CID expression across the cell cycle

Olga Moreno-Moreno, Mònica Torras-Llort, Fernando Azorin

Nucleic Acids Res. 2019 Apr 23; 47(7): 3395–3406. Published online 2019 Feb 8. doi: 10.1093/nar/gkz060

PMCID:: PMC6468245

Abstract Article PDF–6.6M

Select item 57078059.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900210.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 532507711.

Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster

Peter A. Combs, Michael B. Eisen

Version 1. F1000Res. 2017; 6: 41. Published online 2017 Jan 12. doi: 10.12688/f1000research.9720.1

PMCID:: PMC5325077

Abstract Article PDF–10M

Select item 456802512.

Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions

Albert J. Erives

Dev Genes Evol. 2015; 225(5): 259–273. Published online 2015 Jul 15. doi: 10.1007/s00427-015-0508-1

PMCID:: PMC4568025

Abstract Article PDF–2.8M

Select item 452833013.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832914.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288715.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152716.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 391252417.

CAL1 is the Drosophila CENP-A assembly factor

Chin-Chi Chen, Mekonnen Lemma Dechassa, Emily Bettini, Mary B. Ledoux, Christian Belisario, Patrick Heun, Karolin Luger, Barbara G. Mellone

J Cell Biol. 2014 Feb 3; 204(3): 313–329. doi: 10.1083/jcb.201305036

PMCID:: PMC3912524

Abstract Article PDF–3.2M

Select item 381435218.

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity

John D. Laver, Xiao Li, Kristin Ancevicius, J. Timothy Westwood, Craig A. Smibert, Quaid D. Morris, Howard D. Lipshitz

Nucleic Acids Res. 2013 Nov; 41(20): 9438–9460. Published online 2013 Aug 13. doi: 10.1093/nar/gkt702

PMCID:: PMC3814352

Abstract Article PDF–2.4M

Select item 353564819.

DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila

William W. Fisher, Jingyi Jessica Li, Ann S. Hammonds, James B. Brown, Barret D. Pfeiffer, Richard Weiszmann, Stewart MacArthur, Sean Thomas, John A. Stamatoyannopoulos, Michael B. Eisen, Peter J. Bickel, Mark D. Biggin, Susan E. Celniker

Proc Natl Acad Sci U S A. 2012 Dec 26; 109(52): 21330–21335. Published online 2012 Dec 10. doi: 10.1073/pnas.1209589110

PMCID:: PMC3535648

Abstract Article PDF–344K

Select item 353067720.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

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