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Select item 96775211.

Comparative proteomics reveals elevated CCN2 in NGLY1-deficient cells

Rebecca Hetz, Carlo Magaway, Jaylene Everett, Ling Li, Belinda B. Willard, Hudson H. Freeze, Ping He

Biochem Biophys Res Commun. Author manuscript; available in PMC 2023 Jan 3.

Published in final edited form as: Biochem Biophys Res Commun. 2022 Dec 3; 632: 165–172. Published online 2022 Oct 2. doi: 10.1016/j.bbrc.2022.09.100

PMCID:: PMC9677521

Abstract Article PDF–1010K

Select item 82717642.

Loss of peptide:N-glycanase causes proteasome dysfunction mediated by a sugar-recognizing ubiquitin ligase

Yukiko Yoshida, Makoto Asahina, Arisa Murakami, Junko Kawawaki, Meari Yoshida, Reiko Fujinawa, Kazuhiro Iwai, Ryuichi Tozawa, Noriyuki Matsuda, Keiji Tanaka, Tadashi Suzuki

Proc Natl Acad Sci U S A. 2021 Jul 6; 118(27): e2102902118. Published online 2021 Jul 2. doi: 10.1073/pnas.2102902118

PMCID:: PMC8271764

Abstract Article PDF–1.6M

Select item 79387703.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 78978994.

JF1/B6F1 Ngly1^−/− mouse as an isogenic animal model of NGLY1 deficiency

Makoto ASAHINA, Reiko FUJINAWA, Haruhiko FUJIHIRA, Yuki MASAHARA-NEGISHI, Tomohiro ANDOU, Ryuichi TOZAWA, Tadashi SUZUKI

Proc Jpn Acad Ser B Phys Biol Sci. 2021 Feb 10; 97(2): 89–102. doi: 10.2183/pjab.97.005

PMCID:: PMC7897899

Abstract Article PDF–2.8M

Select item 77580595.

A Drosophila screen identifies NKCC1 as a modifier of NGLY1 deficiency

Dana M Talsness, Katie G Owings, Emily Coelho, Gaelle Mercenne, John M Pleinis, Raghavendran Partha, Kevin A Hope, Aamir R Zuberi, Nathan L Clark, Cathleen M Lutz, Aylin R Rodan, Clement Y Chow

eLife. 2020; 9: e57831. Published online 2020 Dec 14. doi: 10.7554/eLife.57831

PMCID:: PMC7758059

Abstract Article PDF–1.1M

Select item 75082266.

Cytosolic N-GlcNAc proteins are formed by the action of endo-β-N-acetylglucosaminidase

Jason C. Maynard, Haruhiko Fujihira, Gabby E. Dolgonos, Tadashi Suzuki, Alma L. Burlingame

Biochem Biophys Res Commun. Author manuscript; available in PMC 2021 Oct 1.

Published in final edited form as: Biochem Biophys Res Commun. 2020 Oct 1; 530(4): 719–724. Published online 2020 Aug 8. doi: 10.1016/j.bbrc.2020.06.127

PMCID:: PMC7508226

Abstract Article PDF–684K

Select item 73945447.

Regulation of BMP4/Dpp retrotranslocation and signaling by deglycosylation

Antonio Galeone, Joshua M Adams, Shinya Matsuda, Maximiliano F Presa, Ashutosh Pandey, Seung Yeop Han, Yuriko Tachida, Hiroto Hirayama, Thomas Vaccari, Tadashi Suzuki, Cathleen M Lutz, Markus Affolter, Aamir Zuberi, Hamed Jafar-Nejad

eLife. 2020; 9: e55596. Published online 2020 Jul 28. doi: 10.7554/eLife.55596

PMCID:: PMC7394544

Abstract Article PDF–9.4M

Select item 73684948.

The sperm associated antigen 6 interactome and its role in spermatogenesis

Yunhao Liu, Ling Zhang, Wei Li, Yuhong Li, Junpin Liu, Shiyang Zhang, Guanglun Pin, Shizhen Song, Pierre F Ray, Christophe Arnoult, Chunghee Cho, Balbina Garcia-Reyes, Uwe Knippschild, Jerome F. Strauss, III, Zhibing Zhang

Reproduction. Author manuscript; available in PMC 2020 Jul 18.

Published in final edited form as: Reproduction. 2019 Aug; 158(2): 181–197. doi: 10.1530/REP-18-0522

PMCID:: PMC7368494

Abstract Article PDF–1.8M

Select item 61701719.

N-glycanase NGLY1 regulates mitochondrial homeostasis and inflammation through NRF1

Kun Yang, Ryan Huang, Haruhiko Fujihira, Tadashi Suzuki, Nan Yan

J Exp Med. 2018 Oct 1; 215(10): 2600–2616. doi: 10.1084/jem.20180783

PMCID:: PMC6170171

Abstract Article PDF–3.7M

Select item 607483310.

Mitochondrial complex II regulates a distinct oxygen sensing mechanism in monocytes

Shraddha Sharma, Jianming Wang, Eduardo Cortes Gomez, Robert T. Taggart, Bora E. Baysal

Hum Mol Genet. 2017 Apr 1; 26(7): 1328–1339. Published online 2017 Feb 13. doi: 10.1093/hmg/ddx041

PMCID:: PMC6074833

Abstract Article PDF–810K

Select item 539848311.

Lethality of mice bearing a knockout of the Ngly1-gene is partially rescued by the additional deletion of the Engase gene

Haruhiko Fujihira, Yuki Masahara-Negishi, Masaru Tamura, Chengcheng Huang, Yoichiro Harada, Shigeharu Wakana, Daisuke Takakura, Nana Kawasaki, Naoyuki Taniguchi, Gen Kondoh, Tadashi Yamashita, Yoko Funakoshi, Tadashi Suzuki

PLoS Genet. 2017 Apr; 13(4): e1006696. Published online 2017 Apr 20. doi: 10.1371/journal.pgen.1006696

PMCID:: PMC5398483

Abstract Article PDF–2.8M

Select item 522315912.

Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression

Alexandra Naba, Karl R. Clauser, D. R. Mani, Steven A. Carr, Richard O. Hynes

Sci Rep. 2017; 7: 40495. Published online 2017 Jan 10. doi: 10.1038/srep40495

PMCID:: PMC5223159

Abstract Article PDF–2.3M

Select item 432128613.

Endo-β-N-acetylglucosaminidase forms N-GlcNAc protein aggregates during ER-associated degradation in Ngly1-defective cells

Chengcheng Huang, Yoichiro Harada, Akira Hosomi, Yuki Masahara-Negishi, Junichi Seino, Haruhiko Fujihira, Yoko Funakoshi, Takehiro Suzuki, Naoshi Dohmae, Tadashi Suzuki

Proc Natl Acad Sci U S A. 2015 Feb 3; 112(5): 1398–1403. Published online 2015 Jan 20. doi: 10.1073/pnas.1414593112

PMCID:: PMC4321286

Abstract Article PDF–1.0M

Select item 357241014.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 317805915.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253416.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582