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Items: 1 to 20 of 23

1.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
2.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
3.
Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in Drosophila melanogaster
Berra Erkosar, Sylvain Kolly, Jan R. van der Meer, Tadeusz J. Kawecki
mBio. 2017 Sep-Oct; 8(5): e01496-17. Published online 2017 Oct 24. doi: 10.1128/mBio.01496-17
PMCID:
PMC5654931
AbstractArticlePDF–691K
4.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
AbstractArticlePDF–3.1M
5.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
6.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
7.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
8.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
9.
Genetic Organization of Interphase Chromosome Bands and Interbands in Drosophila melanogaster
Igor F. Zhimulev, Tatyana Yu. Zykova, Fyodor P. Goncharov, Varvara A. Khoroshko, Olga V. Demakova, Valeriy F. Semeshin, Galina V. Pokholkova, Lidiya V. Boldyreva, Darya S. Demidova, Vladimir N. Babenko, Sergey A. Demakov, Elena S. Belyaeva
PLoS One. 2014; 9(7): e101631. Published online 2014 Jul 29. doi: 10.1371/journal.pone.0101631
PMCID:
PMC4114487
AbstractArticlePDF–1.2M
10.
MEF2 Is an In Vivo Immune-Metabolic Switch
Rebecca I. Clark, Sharon W.S. Tan, Claire B. Péan, Urmas Roostalu, Valérie Vivancos, Kévin Bronda, Martina Pilátová, Jingqi Fu, David W. Walker, Rebecca Berdeaux, Frédéric Geissmann, Marc S. Dionne
Cell. 2013 Oct 10; 155(2): 435–447. doi: 10.1016/j.cell.2013.09.007
PMCID:
PMC3807682
AbstractArticlePDF–1.5M
11.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
12.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
13.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
AbstractArticlePDF–858K
14.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
AbstractArticlePDF–1.3M
15.
Identification of Transcriptional Targets of the Dual Function Transcription Factor/Phosphatase Eyes Absent
Jennifer Jemc, Ilaria Rebay
Dev Biol. Author manuscript; available in PMC 2008 Oct 15.
Published in final edited form as: Dev Biol. 2007 Oct 15; 310(2): 416–429. Published online 2007 Jul 27. doi: 10.1016/j.ydbio.2007.07.024
PMCID:
PMC2075104
AbstractArticlePDF–1.2M
16.
Inbreeding by Environmental Interactions Affect Gene Expression in Drosophila melanogaster
Torsten Nygaard Kristensen, Peter Sørensen, Kamilla Sofie Pedersen, Mogens Kruhøffer, Volker Loeschcke
Genetics. 2006 Jul; 173(3): 1329–1336. doi: 10.1534/genetics.105.054486
PMCID:
PMC1526705
AbstractArticlePDF–132K
17.
Genome-Wide Analysis on Inbreeding Effects on Gene Expression in Drosophila melanogaster
Torsten Nygaard Kristensen, Peter Sørensen, Mogens Kruhøffer, Kamilla Sofie Pedersen, Volker Loeschcke
Genetics. 2005 Sep; 171(1): 157–167. doi: 10.1534/genetics.104.039610
PMCID:
PMC1456508
AbstractArticlePDF–297K
18.
Combined Evidence Annotation of Transposable Elements in Genome Sequences
Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere
PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022
PMCID:
PMC1185648
AbstractArticlePDF–273K
19.
Contact-based sequence alignment
Jens Kleinjung, John Romein, Kuang Lin, Jaap Heringa
Nucleic Acids Res. 2004; 32(8): 2464–2473. Published online 2004 Apr 30. doi: 10.1093/nar/gkh566
PMCID:
PMC419454
AbstractArticlePDF–457K
20.
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly
Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen
Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085
PMCID:
PMC151187
AbstractArticlePDF–280K

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