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Items: 1 to 20 of 56

1.
Targeted RNAi screen identifies transcriptional mechanisms that prevent premature degeneration of adult photoreceptors
Spencer E. Escobedo, Sarah E. McGovern, Juan P. Jauregui-Lozano, Sarah C. Stanhope, Paul Anik, Kratika Singhal, Ryan DeBernardis, Vikki M. Weake
Front Epigenet Epigenom. Author manuscript; available in PMC 2023 Oct 27.
Published in final edited form as: Front Epigenet Epigenom. 2023; 1: 1187980. Published online 2023 May 5. doi: 10.3389/freae.2023.1187980
PMCID:
PMC10603763
AbstractArticlePDF–1.3M
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
Transcriptome analysis of FOXO-dependent hypoxia gene expression identifies Hipk as a regulator of low oxygen tolerance in Drosophila
Kate Ding, Elizabeth C Barretto, Michael Johnston, Byoungchun Lee, Marco Gallo, Savraj S Grewal
G3 (Bethesda) 2022 Dec; 12(12): jkac263. Published online 2022 Oct 6. doi: 10.1093/g3journal/jkac263
PMCID:
PMC9713431
AbstractArticlePDF–1.0M
4.
An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination
Oguz Kanca, Jonathan Zirin, Yanhui Hu, Burak Tepe, Debdeep Dutta, Wen-Wen Lin, Liwen Ma, Ming Ge, Zhongyuan Zuo, Lu-Ping Liu, Robert W Levis, Norbert Perrimon, Hugo J Bellen
eLife. 2022; 11: e76077. Published online 2022 Jun 20. doi: 10.7554/eLife.76077
PMCID:
PMC9239680
AbstractArticlePDF–1.2M
5.
Cross-species identification of PIP5K1-, splicing- and ubiquitin-related pathways as potential targets for RB1-deficient cells
Andrey A. Parkhitko, Arashdeep Singh, Sharon Hsieh, Yanhui Hu, Richard Binari, Christopher J. Lord, Sridhar Hannenhalli, Colm J. Ryan, Norbert Perrimon
PLoS Genet. 2021 Feb; 17(2): e1009354. Published online 2021 Feb 16. doi: 10.1371/journal.pgen.1009354
PMCID:
PMC7909629
AbstractArticlePDF–4.6M
6.
Spt6 is a maintenance factor for centromeric CENP-A
Georg O. M. Bobkov, Anming Huang, Sebastiaan J. W. van den Berg, Sreyoshi Mitra, Eduard Anselm, Vasiliki Lazou, Sarah Schunter, Regina Feederle, Axel Imhof, Alexandra Lusser, Lars E. T. Jansen, Patrick Heun
Nat Commun. 2020; 11: 2919. Published online 2020 Jun 10. doi: 10.1038/s41467-020-16695-7
PMCID:
PMC7287101
AbstractArticlePDF–3.8M
7.
Loss of Histone Locus Bodies in the Mature Hemocytes of Larval Lymph Gland Result in Hyperplasia of the Tissue in mxc Mutants of Drosophila
Masanori Kurihara, Kouyou Komatsu, Rie Awane, Yoshihiro H. Inoue
Int J Mol Sci. 2020 Mar; 21(5): 1586. Published online 2020 Feb 26. doi: 10.3390/ijms21051586
PMCID:
PMC7084650
AbstractArticlePDF–4.1M
8.
Satellite DNA-containing gigantic introns in a unique gene expression program during Drosophila spermatogenesis
Jaclyn M. Fingerhut, Jessica V. Moran, Yukiko M. Yamashita
PLoS Genet. 2019 May; 15(5): e1008028. Published online 2019 May 9. doi: 10.1371/journal.pgen.1008028
PMCID:
PMC6508621
AbstractArticlePDF–5.0M
9.
Transcription and remodeling produce asymmetrically unwrapped nucleosomal intermediates
Srinivas Ramachandran, Kami Ahmad, Steven Henikoff
Mol Cell. Author manuscript; available in PMC 2019 Mar 17.
Published in final edited form as: Mol Cell. 2017 Dec 21; 68(6): 1038–1053.e4. Published online 2017 Dec 7. doi: 10.1016/j.molcel.2017.11.015
PMCID:
PMC6421108
AbstractArticlePDF–2.8M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
12.
Coordinating cell cycle-regulated histone gene expression through assembly and function of the Histone Locus Body
Robert J. Duronio, William F. Marzluff
RNA Biol. 2017; 14(6): 726–738. Published online 2017 Jan 6. doi: 10.1080/15476286.2016.1265198
PMCID:
PMC5519241
AbstractArticlePDF–752K
13.
Exon junction complex proteins bind nascent transcripts independently of pre-mRNA splicing in Drosophila melanogaster
Subhendu Roy Choudhury, Anand K Singh, Tina McLeod, Marco Blanchette, Boyun Jang, Paul Badenhorst, Aditi Kanhere, Saverio Brogna
eLife. 2016; 5: e19881. Published online 2016 Nov 23. doi: 10.7554/eLife.19881
PMCID:
PMC5158136
AbstractArticlePDF–13M
14.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K
15.
Suppressor of sable [Su(s)] and Wdr82 down-regulate RNA from heat-shock-inducible repetitive elements by a mechanism that involves transcription termination
Paul Brewer-Jensen, Carrie B. Wilson, John Abernethy, Lonna Mollison, Samantha Card, Lillie L. Searles
RNA. 2016 Jan; 22(1): 139–154. doi: 10.1261/rna.048819.114
PMCID:
PMC4691828
AbstractArticlePDF–586K
16.
Reagent and Data Resources for Investigation of RNA Binding Protein Functions in Drosophila melanogaster Cultured Cells
Stephanie E. Mohr, Yanhui Hu, Kirstin Rudd, Michael Buckner, Quentin Gilly, Blake Foster, Katarzyna Sierzputowska, Aram Comjean, Bing Ye, Norbert Perrimon
G3 (Bethesda) 2015 Sep; 5(9): 1919–1924. Published online 2015 Jul 21. doi: 10.1534/g3.115.019364
PMCID:
PMC4555228
AbstractArticlePDF–775K
17.
Identification of Drosophila centromere associated proteins by quantitative affinity purification-mass spectrometry
Teresa K. Barth, Georg O.M. Schade, Andreas Schmidt, Irene Vetter, Marc Wirth, Patrick Heun, Axel Imhof, Andreas W. Thomae
Data Brief. 2015 Sep; 4: 544–550. Published online 2015 Jul 26. doi: 10.1016/j.dib.2015.07.016
PMCID:
PMC4536286
AbstractArticlePDF–485K
18.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
19.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
20.
A large-scale in vivo RNAi screen to identify genes involved in Notch-mediated follicle cell differentiation and cell cycle switches
Dongyu Jia, Muhammed Soylemez, Gabriel Calvin, Randy Bornmann, Jamal Bryant, Cameron Hanna, Yi-Chun Huang, Wu-Min Deng
Sci Rep. 2015; 5: 12328. Published online 2015 Jul 24. doi: 10.1038/srep12328
PMCID:
PMC4513280
AbstractArticlePDF–2.8M

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