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Select item 76486481.

A single-cell atlas and lineage analysis of the adult Drosophila ovary

Katja Rust, Lauren E. Byrnes, Kevin Shengyang Yu, Jason S. Park, Julie B. Sneddon, Aaron D. Tward, Todd G. Nystul

Nat Commun. 2020; 11: 5628. Published online 2020 Nov 6. doi: 10.1038/s41467-020-19361-0

Correction in:: Nat Commun. 2021; 12: 5951.

PMCID:: PMC7648648

Abstract Article PDF–6.1M

Select item 58374422.

Editor’s Highlight: Genetic Targets of Acute Toluene Inhalation in Drosophila melanogaster

Philip J. Bushnell, William O. Ward, Tatiana V. Morozova, Wendy M. Oshiro, Mimi T. Lin, Richard S. Judson, Susan D. Hester, John M. McKee, Mark Higuchi

Toxicol Sci. 2017 Mar; 156(1): 230–239. Published online 2016 Dec 24. doi: 10.1093/toxsci/kfw243

PMCID:: PMC5837442

Abstract Article PDF–661K

Select item 57078053.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890024.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 53120045.

Seizure control through genetic and pharmacological manipulation of Pumilio in Drosophila: a key component of neuronal homeostasis

Wei-Hsiang Lin, Carlo N. G. Giachello, Richard A. Baines

Dis Model Mech. 2017 Feb 1; 10(2): 141–150. doi: 10.1242/dmm.027045

PMCID:: PMC5312004

Abstract Article

Select item 45283306.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 45283297.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 43528878.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 38217039.

Cytoplasmic polyadenylation is a major mRNA regulator during oogenesis and egg activation in Drosophila

Jun Cui, Caroline V. Sartain, Jeffrey A. Pleiss, Mariana F. Wolfner

Dev Biol. Author manuscript; available in PMC 2014 Nov 1.

Published in final edited form as: Dev Biol. 2013 Nov 1; 383(1): 10.1016/j.ydbio.2013.08.013. Published online 2013 Aug 23. doi: 10.1016/j.ydbio.2013.08.013

PMCID:: PMC3821703

Abstract Article PDF–1.9M

Select item 353067710.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 346946711.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Abstract Article PDF–1.6M

Select item 341600212.

New Negative Feedback Regulators of Egfr Signaling in Drosophila

Jonathan P. Butchar, Donna Cain, Sathiya N. Manivannan, Andrea D. McCue, Liana Bonanno, Sarah Halula, Sharon Truesdell, Christina L. Austin, Thomas L. Jacobsen, Amanda Simcox

Genetics. 2012 Aug; 191(4): 1213–1226. doi: 10.1534/genetics.112.141093

PMCID:: PMC3416002

Abstract Article PDF–10M

Select item 330382513.

Genome Features of “Dark-Fly”, a Drosophila Line Reared Long-Term in a Dark Environment

Minako Izutsu, Jun Zhou, Yuzo Sugiyama, Osamu Nishimura, Tomoyuki Aizu, Atsushi Toyoda, Asao Fujiyama, Kiyokazu Agata, Naoyuki Fuse

PLoS One. 2012; 7(3): e33288. Published online 2012 Mar 14. doi: 10.1371/journal.pone.0033288

PMCID:: PMC3303825

Abstract Article PDF–688K

Select item 304044114.

A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene

G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger

Cell. Author manuscript; available in PMC 2011 Nov 12.

Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047

PMCID:: PMC3040441

Abstract Article PDF–2.0M

Select item 303293315.

The transcriptional diversity of 25 Drosophila cell lines

Lucy Cherbas, Aarron Willingham, Dayu Zhang, Li Yang, Yi Zou, Brian D. Eads, Joseph W. Carlson, Jane M. Landolin, Philipp Kapranov, Jacqueline Dumais, Anastasia Samsonova, Jeong-Hyeon Choi, Johnny Roberts, Carrie A. Davis, Haixu Tang, Marijke J. van Baren, Srinka Ghosh, Alexander Dobin, Kim Bell, Wei Lin, Laura Langton, Michael O. Duff, Aaron E. Tenney, Chris Zaleski, Michael R. Brent, Roger A. Hoskins, Thomas C. Kaufman, Justen Andrews, Brenton R. Graveley, Norbert Perrimon, Susan E. Celniker, Thomas R. Gingeras, Peter Cherbas

Genome Res. 2011 Feb; 21(2): 301–314. doi: 10.1101/gr.112961.110

PMCID:: PMC3032933

Abstract Article PDF–1.4M

Select item 282505316.

Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin

Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker

Science. Author manuscript; available in PMC 2010 Feb 19.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816

PMCID:: PMC2825053

Abstract Article PDF–858K

Select item 281928017.

The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin

Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen

Science. Author manuscript; available in PMC 2010 Feb 10.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815

Correction in:: volume 317 on page 1325

PMCID:: PMC2819280

Abstract Article PDF–1.3M

Select item 214023918.

Spitz from the Retina Regulates Genes Transcribed in the Second Mitotic Wave, Peripodial Epithelium, Glia and Plasmatocytes of the Drosophila Eye Imaginal Disc

Lucy C. Firth, Nicholas E. Baker

Dev Biol. Author manuscript; available in PMC 2008 Jul 15.

Published in final edited form as: Dev Biol. 2007 Jul 15; 307(2): 521–538. Published online 2007 May 3. doi: 10.1016/j.ydbio.2007.04.037

Correction in:: volume 325 on page 307

PMCID:: PMC2140239

Abstract Article PDF–2.2M

Select item 118564819.

Combined Evidence Annotation of Transposable Elements in Genome Sequences

Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere

PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022

PMCID:: PMC1185648

Abstract Article PDF–273K

Select item 15118720.

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen

Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085

PMCID:: PMC151187

Abstract Article PDF–280K

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