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Select item 105756291.

Chromatin and gene expression changes during female Drosophila germline stem cell development illuminate the biology of highly potent stem cells

Liang-Yu Pang, Steven DeLuca, Haolong Zhu, John M Urban, Allan C Spradling

eLife. 2023; 12: RP90509. Published online 2023 Oct 13. doi: 10.7554/eLife.90509

PMCID:: PMC10575629

Abstract Article PDF–6.3M

Select item 89608062.

Genetic variation of macronutrient tolerance in Drosophila melanogaster

E. Havula, S. Ghazanfar, N. Lamichane, D. Francis, K. Hasygar, Y. Liu, L. A. Alton, J. Johnstone, E. J. Needham, T. Pulpitel, T. Clark, H. N. Niranjan, V. Shang, V. Tong, N. Jiwnani, G. Audia, A. N. Alves, L. Sylow, C. Mirth, G. G. Neely, J. Yang, V. Hietakangas, S. J. Simpson, A. M. Senior

Nat Commun. 2022; 13: 1637. Published online 2022 Mar 28. doi: 10.1038/s41467-022-29183-x

PMCID:: PMC8960806

Abstract Article PDF–3.3M

Select item 86644863.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 84942284.

A single-cell atlas reveals unanticipated cell type complexity in Drosophila ovaries

Maija Slaidina, Selena Gupta, Torsten U. Banisch, Ruth Lehmann

Genome Res. 2021 Oct; 31(10): 1938–1951. doi: 10.1101/gr.274340.120

PMCID:: PMC8494228

Abstract Article PDF–15M

Select item 61704455.

A post-ingestive amino acid sensor promotes food consumption in Drosophila

Zhe Yang, Rui Huang, Xin Fu, Gaohang Wang, Wei Qi, Decai Mao, Zhaomei Shi, Wei L. Shen, Liming Wang

Cell Res. 2018 Oct; 28(10): 1013–1025. Published online 2018 Sep 12. doi: 10.1038/s41422-018-0084-9

PMCID:: PMC6170445

Abstract Article PDF–2.3M

Select item 60732096.

The Trithorax group protein dMLL3/4 instructs the assembly of the zygotic genome at fertilization

Pedro Prudêncio, Leonardo G Guilgur, João Sobral, Jörg D Becker, Rui Gonçalo Martinho, Paulo Navarro‐Costa

EMBO Rep. 2018 Aug; 19(8): e45728. Published online 2018 Jul 23. doi: 10.15252/embr.201845728

PMCID:: PMC6073209

Abstract Article PDF–1.9M

Select item 57078057.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890028.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 47056669.

RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1

Christopher I. Jones, Amy L. Pashler, Benjamin P. Towler, Sophie R. Robinson, Sarah F. Newbury

Nucleic Acids Res. 2016 Jan 8; 44(1): 267–280. Published online 2015 Dec 9. doi: 10.1093/nar/gkv1336

PMCID:: PMC4705666

Abstract Article PDF–7.5M

Select item 460011610.

Infection Dynamics and Immune Response in a Newly Described Drosophila-Trypanosomatid Association

Phineas T. Hamilton, Jan Votýpka, Anna Dostálová, Vyacheslav Yurchenko, Nathan H. Bird, Julius Lukeš, Bruno Lemaitre, Steve J. Perlman

mBio. 2015 Sep-Oct; 6(5): e01356-15. Published online 2015 Sep 15. doi: 10.1128/mBio.01356-15

PMCID:: PMC4600116

Abstract Article PDF–1.8M

Select item 452833011.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832912.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288713.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152714.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 423187515.

The Drosophila blood-brain barrier: development and function of a glial endothelium

Stefanie Limmer, Astrid Weiler, Anne Volkenhoff, Felix Babatz, Christian Klämbt

Front Neurosci. 2014; 8: 365. Prepublished online 2014 Oct 14. Published online 2014 Nov 14. doi: 10.3389/fnins.2014.00365

PMCID:: PMC4231875

Abstract Article PDF–1.2M

Select item 353067716.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 346946717.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Abstract Article PDF–1.6M

Select item 304044118.

A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene

G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger

Cell. Author manuscript; available in PMC 2011 Nov 12.

Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047

PMCID:: PMC3040441

Abstract Article PDF–2.0M

Select item 304013019.

Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis

Tania Dottorini, Nicola Senin, Giorgio Mazzoleni, Kalle Magnusson, Andrea Crisanti

BMC Bioinformatics. 2011; 12: 34. Published online 2011 Jan 26. doi: 10.1186/1471-2105-12-34

PMCID:: PMC3040130

Abstract Article PDF–478K

Select item 285522120.

A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function

G. Gregory Neely, Keiji Kuba, Anthony Cammarato, Kazuya Isobe, Sabine Amann, Liyong Zhang, Mitsushige Murata, Lisa Elmén, Vaijayanti Gupta, Suchir Arora, Rinku Sarangi, Debasis Dan, Susumu Fujisawa, Takako Usami, Cui-ping Xia, Alex C. Keene, Nakissa N. Alayari, Hiroyuki Yamakawa, Ulrich Elling, Christian Berger, Maria Novatchkova, Rubina Koglgruber, Keiichi Fukuda, Hiroshi Nishina, Mitsuaki Isobe, J. Andrew Pospisilik, Yumiko Imai, Arne Pfeufer, Andrew A Hicks, Peter P. Pramstaller, Sai Subramaniam, Akinori Kimura, Karen Ocorr, Rolf Bodmer, Josef M. Penninger

Cell. Author manuscript; available in PMC 2011 Apr 2.

Published in final edited form as: Cell. 2010 Apr 2; 141(1): 142–153. doi: 10.1016/j.cell.2010.02.023

PMCID:: PMC2855221

Abstract Article PDF–5.3M

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