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Items: 20

1.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
2.
The PurR regulon in Escherichia coli K-12 MG1655
Byung-Kwan Cho, Stephen A. Federowicz, Mallory Embree, Young-Seoub Park, Donghyuk Kim, Bernhard Ø. Palsson
Nucleic Acids Res. 2011 Aug; 39(15): 6456–6464. Published online 2011 May 13. doi: 10.1093/nar/gkr307
PMCID:
PMC3159470
AbstractArticlePDF–330K
3.
Allostery in the LacI/GalR Family: Variations on a Theme
Liskin Swint-Kruse, Kathleen S. Matthews
Curr Opin Microbiol. Author manuscript; available in PMC 2010 Apr 1.
Published in final edited form as: Curr Opin Microbiol. 2009 Apr; 12(2): 129–137. Published online 2009 Mar 5. doi: 10.1016/j.mib.2009.01.009
PMCID:
PMC2688824
AbstractArticlePDF–1.7M
4.
Fine-tuning function: Correlation of hinge domain interactions with functional distinctions between LacI and PurR
Liskin Swint-Kruse, Christopher Larson, B. Montgomery Pettitt, Kathleen Shive Matthews
Protein Sci. 2002 Apr; 11(4): 778–794. doi: 10.1110/ps.4050102
PMCID:
PMC2373529
AbstractArticlePDF–9.6M
5.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
6.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
7.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
8.
Sequence of gene malG in E. coli K12: homologies between integral membrane components from binding protein-dependent transport systems.
E Dassa, M Hofnung
EMBO J. 1985 Sep; 4(9): 2287–2293. doi: 10.1002/j.1460-2075.1985.tb03928.x
Correction in:
EMBO J. 1986 Jan; 5(1): 206.
PMCID:
PMC554499
SummaryPage BrowsePDF–1.2M
9.
Autoregulation of Escherichia coli purR requires two control sites downstream of the promoter.
R J Rolfes, H Zalkin
J Bacteriol. 1990 Oct; 172(10): 5758–5766. doi: 10.1128/jb.172.10.5758-5766.1990
PMCID:
PMC526892
SummaryPage BrowsePDF–2.6M
10.
Purification of the Escherichia coli purine regulon repressor and identification of corepressors.
R J Rolfes, H Zalkin
J Bacteriol. 1990 Oct; 172(10): 5637–5642. doi: 10.1128/jb.172.10.5637-5642.1990
PMCID:
PMC526876
SummaryPage BrowsePDF–1.3M
11.
Regulation of the Escherichia coli glyA gene by the purR gene product.
J G Steiert, R J Rolfes, H Zalkin, G V Stauffer
J Bacteriol. 1990 Jul; 172(7): 3799–3803. doi: 10.1128/jb.172.7.3799-3803.1990
PMCID:
PMC213358
SummaryPage BrowsePDF–1.2M
12.
Genes of the Escherichia coli pur regulon are negatively controlled by a repressor-operator interaction.
B He, A Shiau, K Y Choi, H Zalkin, J M Smith
J Bacteriol. 1990 Aug; 172(8): 4555–4562. doi: 10.1128/jb.172.8.4555-4562.1990
PMCID:
PMC213288
SummaryPage BrowsePDF–2.3M
13.
Genetic evidence for a repressor of synthesis of cytosine deaminase and purine biosynthesis enzymes in Escherichia coli.
M Kilstrup, L M Meng, J Neuhard, P Nygaard
J Bacteriol. 1989 Apr; 171(4): 2124–2127. doi: 10.1128/jb.171.4.2124-2127.1989
PMCID:
PMC209866
SummaryPage BrowsePDF–609K
14.
Role of the purine repressor in the regulation of pyrimidine gene expression in Escherichia coli K-12.
H R Wilson, C L Turnbough, Jr
J Bacteriol. 1990 Jun; 172(6): 3208–3213. doi: 10.1128/jb.172.6.3208-3213.1990
Correction in:
J Bacteriol. 1990 Aug; 172(8): 4744.
PMCID:
PMC209126
SummaryPage BrowsePDF–1.3M
15.
Regulation of Escherichia coli pyrC by the purine regulon repressor protein.
K Y Choi, H Zalkin
J Bacteriol. 1990 Jun; 172(6): 3201–3207. doi: 10.1128/jb.172.6.3201-3207.1990
PMCID:
PMC209125
SummaryPage BrowsePDF–1.7M
16.
Structural characterization and corepressor binding of the Escherichia coli purine repressor.
K Y Choi, H Zalkin
J Bacteriol. 1992 Oct; 174(19): 6207–6214. doi: 10.1128/jb.174.19.6207-6214.1992
PMCID:
PMC207689
SummaryPage BrowsePDF–1.6M
17.
Escherichia coli purB gene: cloning, nucleotide sequence, and regulation by purR.
B He, J M Smith, H Zalkin
J Bacteriol. 1992 Jan; 174(1): 130–136. doi: 10.1128/jb.174.1.130-136.1992
PMCID:
PMC205686
SummaryPage BrowsePDF–1.7M
18.
Role of the purine repressor hinge sequence in repressor function.
K Y Choi, H Zalkin
J Bacteriol. 1994 Mar; 176(6): 1767–1772. doi: 10.1128/jb.176.6.1767-1772.1994
PMCID:
PMC205267
SummaryPage BrowsePDF–1.0M
19.
Regulation of Escherichia coli purA by purine repressor, one component of a dual control mechanism.
B He, H Zalkin
J Bacteriol. 1994 Feb; 176(4): 1009–1013. doi: 10.1128/jb.176.4.1009-1013.1994
PMCID:
PMC205151
SummaryPage BrowsePDF–1.0M
20.
Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison
Lee Ann McCue, William Thompson, C. Steven Carmack, Charles E. Lawrence
Genome Res. 2002 Oct; 12(10): 1523–1532. doi: 10.1101/gr.323602
PMCID:
PMC187528
AbstractArticlePDF–192K

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