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Items: 1 to 20 of 56

1.
Assessment of community efforts to advance network-based prediction of protein–protein interactions
Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu
Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7
PMCID:
PMC10033937
AbstractArticlePDF–1.5M
2.
Proteome‐scale mapping of binding sites in the unstructured regions of the human proteome
Caroline Benz, Muhammad Ali, Izabella Krystkowiak, Leandro Simonetti, Ahmed Sayadi, Filip Mihalic, Johanna Kliche, Eva Andersson, Per Jemth, Norman E Davey, Ylva Ivarsson
Mol Syst Biol. 2022 Jan; 18(1): e10584. Published online 2022 Jan 19. doi: 10.15252/msb.202110584
PMCID:
PMC8769072
AbstractArticlePDF–2.9M
3.
Atypical presentation of Charcot-Marie-Tooth disease type 1C with a new mutation: a case report
Monika Turčanová Koprušáková, Milan Grofik, Ema Kantorová, Petra Jungová, Ján Chandoga, Martin Kolisek, Peter Valkovič, Matej Škorvánek, Rafal Ploski, Egon Kurča, Štefan Sivák
BMC Neurol. 2021; 21: 293. Published online 2021 Jul 27. doi: 10.1186/s12883-021-02316-3
PMCID:
PMC8314550
AbstractArticlePDF–922K
4.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
5.
The endosomal trafficking regulator LITAF controls the cardiac Nav1.5 channel via the ubiquitin ligase NEDD4-2
Nilüfer N. Turan, Karni S. Moshal, Karim Roder, Brett C. Baggett, Anatoli Y. Kabakov, Saroj Dhakal, Ryota Teramoto, David Yi-Eng Chiang, Mingwang Zhong, An Xie, Yichun Lu, Samuel C. Dudley, Jr., Calum A. MacRae, Alain Karma, Gideon Koren
J Biol Chem. 2020 Dec 25; 295(52): 18148–18159. Published online 2021 Jan 13. doi: 10.1074/jbc.RA120.015216
PMCID:
PMC7939464
AbstractArticlePDF–2.2M
6.
Sequential CRISPR-based screens identify LITAF and CDIP1 as the Bacillus cereus hemolysin BL toxin host receptors
Jie Liu, Zehua Zuo, Inka Sastalla, Chengyu Liu, Ji Yong Jang, Yusuke Sekine, Yuesheng Li, Mehdi Pirooznia, Stephen H. Leppla, Toren Finkel, Shihui Liu
Cell Host Microbe. Author manuscript; available in PMC 2021 Sep 9.
Published in final edited form as: Cell Host Microbe. 2020 Sep 9; 28(3): 402–410.e5. Published online 2020 Jun 15. doi: 10.1016/j.chom.2020.05.012
PMCID:
PMC7486266
AbstractArticlePDF–1.8M
7.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
8.
The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis
Luisa Capalbo, Zuni I. Bassi, Marco Geymonat, Sofia Todesca, Liviu Copoiu, Anton J. Enright, Giuliano Callaini, Maria Giovanna Riparbelli, Lu Yu, Jyoti S. Choudhary, Enrico Ferrero, Sally Wheatley, Max E. Douglas, Masanori Mishima, Pier Paolo D’Avino
Nat Commun. 2019; 10: 4513. Published online 2019 Oct 4. doi: 10.1038/s41467-019-12507-9
PMCID:
PMC6778137
AbstractArticlePDF–7.8M
9.
LITAF Regulates Cardiac L-type Calcium Channels by Modulating NEDD4-1 Ubiquitin Ligase
Karni S. Moshal, Karim Roder, Anatoli Y. Kabakov, Andreas A. Werdich, David Yi-Eng Chiang, Nilüfer N. Turan, An Xie, Tae Yun Kim, Leroy L. Cooper, Yichun Lu, Mingwang Zhong, Weiyan Li, Dmitry Terentyev, Bum-Rak Choi, Alain Karma, Calum A. MacRae, Gideon Koren
Circ Genom Precis Med. Author manuscript; available in PMC 2020 Sep 1.
Published in final edited form as: Circ Genom Precis Med. 2019 Sep; 12(9): 407–420. Published online 2019 Aug 28. doi: 10.1161/CIRCGEN.119.002641
PMCID:
PMC6750970
AbstractArticlePDF–2.4M
10.
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations
Robert Fragoza, Jishnu Das, Shayne D. Wierbowski, Jin Liang, Tina N. Tran, Siqi Liang, Juan F. Beltran, Christen A. Rivera-Erick, Kaixiong Ye, Ting-Yi Wang, Li Yao, Matthew Mort, Peter D. Stenson, David N. Cooper, Xiaomu Wei, Alon Keinan, John C. Schimenti, Andrew G. Clark, Haiyuan Yu
Nat Commun. 2019; 10: 4141. Published online 2019 Sep 12. doi: 10.1038/s41467-019-11959-3
PMCID:
PMC6742646
AbstractArticlePDF–1.2M
11.
miRNA‐106a and prostate cancer radioresistance: a novel role for LITAF in ATM regulation
Christianne Hoey, Jessica Ray, Jouhyun Jeon, Xiaoyong Huang, Samira Taeb, Jarkko Ylanko, David W. Andrews, Paul C. Boutros, Stanley K. Liu
Mol Oncol. 2018 Aug; 12(8): 1324–1341. Published online 2018 Jun 14. doi: 10.1002/1878-0261.12328
PMCID:
PMC6068351
AbstractArticlePDF–1.4M
12.
SIMPLE binds specifically to PI4P through SIMPLE-like domain and participates in protein trafficking in the trans-Golgi network and/or recycling endosomes
Yasuhiro Moriwaki, Yuho Ohno, Tomohiro Ishii, Yuki Takamura, Yuko Kita, Kazuhiko Watabe, Kazunori Sango, Shoutaro Tsuji, Hidemi Misawa
PLoS One. 2018; 13(6): e0199829. Published online 2018 Jun 28. doi: 10.1371/journal.pone.0199829
Expression of Concern in:
PLoS One. 2023; 18(1): e0280119.
PMCID:
PMC6023223
AbstractArticlePDF–6.8M
13.
RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination
Nila Roy Choudhury, Gregory Heikel, Maryia Trubitsyna, Peter Kubik, Jakub Stanislaw Nowak, Shaun Webb, Sander Granneman, Christos Spanos, Juri Rappsilber, Alfredo Castello, Gracjan Michlewski
BMC Biol. 2017; 15: 105. Published online 2017 Nov 8. doi: 10.1186/s12915-017-0444-9
PMCID:
PMC5678581
AbstractArticlePDF–3.2M
14.
Charcot-Marie-Tooth disease type 1C: Clinical and electrophysiological findings for the c.334G>A (p.Gly112Ser) LITAF/SIMPLE mutation
Nivedita U. Jerath, Michael E. Shy
Muscle Nerve. Author manuscript; available in PMC 2018 Dec 1.
Published in final edited form as: Muscle Nerve. 2017 Dec; 56(6): 1092–1095. Published online 2017 Apr 29. doi: 10.1002/mus.25600
PMCID:
PMC5587391
AbstractArticlePDF–170K
15.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
16.
The feedback loop of LITAF and BCL6 is involved in regulating apoptosis in B cell non-Hodgkin's-lymphoma
Yaoyao Shi, Yue Kuai, Lizhen Lei, Yuanyuan Weng, Friederike Berberich-Siebelt, Xinxia Zhang, Jinjie Wang, Yuan Zhou, Xin Jiang, Guoping Ren, Hongyang Pan, Zhengrong Mao, Ren Zhou
Oncotarget. 2016 Nov 22; 7(47): 77444–77456. Published online 2016 Oct 15. doi: 10.18632/oncotarget.12680
PMCID:
PMC5363597
AbstractArticlePDF–7.5M
17.
The topology, structure and PE interaction of LITAF underpin a Charcot-Marie-Tooth disease type 1C
Anita K. Ho, Jane L. Wagstaff, Paul T. Manna, Lena Wartosch, Seema Qamar, Elspeth F. Garman, Stefan M. V. Freund, Rhys C. Roberts
BMC Biol. 2016; 14: 109. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0332-8
PMCID:
PMC5142333
AbstractArticlePDF–3.2M
18.
The Charcot Marie Tooth disease protein LITAF is a zinc-binding monotopic membrane protein
Wenxia Qin, Lydia Wunderley, Anne L. Barrett, Stephen High, Philip G. Woodman
Biochem J. 2016 Nov 1; 473(21): 3965–3978. Prepublished online 2016 Aug 31. Published online 2016 Oct 27. doi: 10.1042/BCJ20160657
PMCID:
PMC5095921
AbstractArticlePDF–1.2M
19.
PIG7 promotes leukemia cell chemosensitivity via lysosomal membrane permeabilization
Jiazhuo Liu, Leiwen Peng, Ting Niu, Yu Wu, Jianjun Li, Fangfang Wang, Yuhuan Zheng, Ting Liu
Oncotarget. 2016 Jan 26; 7(4): 4841–4859. Published online 2015 Dec 23. doi: 10.18632/oncotarget.6739
PMCID:
PMC4826247
AbstractArticlePDF–8.4M
20.
LPS-induced TNF-α factor mediates pro-inflammatory and pro-fibrogenic pattern in non-alcoholic fatty liver disease
Sara Ceccarelli, Nadia Panera, Marco Mina, Daniela Gnani, Cristiano De Stefanis, Annalisa Crudele, Chiara Rychlicki, Stefania Petrini, Giovannella Bruscalupi, Laura Agostinelli, Laura Stronati, Salvatore Cucchiara, Giovanni Musso, Cesare Furlanello, Gianluca Svegliati-Baroni, Valerio Nobili, Anna Alisi
Oncotarget. 2015 Dec 8; 6(39): 41434–41452. Published online 2015 Oct 8. doi: 10.18632/oncotarget.5163
PMCID:
PMC4747165
AbstractArticlePDF–7.6M

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