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Select item 106355731.

The pleiotropic functions of Pri smORF peptides synchronize leg development regulators

Damien Markus, Aurore Pelletier, Muriel Boube, Fillip Port, Michael Boutros, François Payre, Benedikt Obermayer, Jennifer Zanet

PLoS Genet. 2023 Oct; 19(10): e1011004. Published online 2023 Oct 30. doi: 10.1371/journal.pgen.1011004

PMCID:: PMC10635573

Abstract Article PDF–4.5M

Select item 101057362.

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 84357363.

Pri smORF Peptides Are Wide Mediators of Ecdysone Signaling, Contributing to Shape Spatiotemporal Responses

Azza Dib, Jennifer Zanet, Alexandra Mancheno-Ferris, Maylis Gallois, Damien Markus, Philippe Valenti, Simon Marques-Prieto, Serge Plaza, Yuji Kageyama, Hélène Chanut-Delalande, François Payre

Front Genet. 2021; 12: 714152. Published online 2021 Aug 30. doi: 10.3389/fgene.2021.714152

PMCID:: PMC8435736

Abstract Article PDF–5.5M

Select item 59277674.

Cellular diversity in the Drosophila midbrain revealed by single-cell transcriptomics

Vincent Croset, Christoph D Treiber, Scott Waddell

eLife. 2018; 7: e34550. Published online 2018 Apr 19. doi: 10.7554/eLife.34550

PMCID:: PMC5927767

Abstract Article PDF–6.7M

Select item 57078055.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890026.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 55154467.

Evolution and multiple roles of the Pancrustacea specific transcription factor zelda in insects

Lupis Ribeiro, Vitória Tobias-Santos, Daniele Santos, Felipe Antunes, Geórgia Feltran, Jackson de Souza Menezes, L. Aravind, Thiago M. Venancio, Rodrigo Nunes da Fonseca

PLoS Genet. 2017 Jul; 13(7): e1006868. Published online 2017 Jul 3. doi: 10.1371/journal.pgen.1006868

PMCID:: PMC5515446

Abstract Article PDF–18M

Select item 51446808.

Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs

Hongmei Li, Chuansheng Hu, Ling Bai, Hua Li, Mingfa Li, Xiaodong Zhao, Daniel M. Czajkowsky, Zhifeng Shao

DNA Res. 2016 Dec; 23(6): 571–580. Published online 2016 Aug 24. doi: 10.1093/dnares/dsw040

PMCID:: PMC5144680

Abstract Article PDF–688K

Select item 49280479.

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome

Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair

Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999

PMCID:: PMC4928047

Abstract Article PDF–3.1M

Select item 475155610.

Dynamics of Dark-Fly Genome Under Environmental Selections

Minako Izutsu, Atsushi Toyoda, Asao Fujiyama, Kiyokazu Agata, Naoyuki Fuse

G3 (Bethesda) 2016 Feb; 6(2): 365–376. Published online 2015 Dec 4. doi: 10.1534/g3.115.023549

PMCID:: PMC4751556

Abstract Article PDF–1.6M

Select item 454789411.

Chromatin signatures at Notch-regulated enhancers reveal large-scale changes in H3K56ac upon activation

Lenka Skalska, Robert Stojnic, Jinghua Li, Bettina Fischer, Gustavo Cerda-Moya, Hiroshi Sakai, Shahragim Tajbakhsh, Steven Russell, Boris Adryan, Sarah J Bray

EMBO J. 2015 Jul 14; 34(14): 1889–1904. Published online 2015 Jun 11. doi: 10.15252/embj.201489923

PMCID:: PMC4547894

Abstract Article PDF–2.4M

Select item 452833012.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832913.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288714.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 405398915.

Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization

Delphine Menoret, Marc Santolini, Isabelle Fernandes, Rebecca Spokony, Jennifer Zanet, Ignacio Gonzalez, Yvan Latapie, Pierre Ferrer, Hervé Rouault, Kevin P White, Philippe Besse, Vincent Hakim, Stein Aerts, Francois Payre, Serge Plaza

Genome Biol. 2013; 14(8): R86. Published online 2013 Aug 23. doi: 10.1186/gb-2013-14-8-r86

PMCID:: PMC4053989

Abstract Article PDF–2.2M

Select item 394086916.

Tarsal-less peptides control Notch signalling through the Shavenbaby transcription factor

Jose I Pueyo, Juan Pablo Couso

Dev Biol. Author manuscript; available in PMC 2014 Mar 4.

Published in final edited form as: Dev Biol. 2011 Jul 15; 355(2): 183–193. Published online 2011 Apr 17. doi: 10.1016/j.ydbio.2011.03.033

PMCID:: PMC3940869

Abstract Article PDF–5.3M

Select item 394086517.

Leg regeneration in Drosophila abridges the normal developmental program

Manel Bosch, Sarah Anne Bishop, Jaume Baguña, Juan Pablo Couso

Int J Dev Biol. Author manuscript; available in PMC 2014 Mar 4.

Published in final edited form as: Int J Dev Biol. 2010; 54(0): 1241–1250. doi: 10.1387/ijdb.093010mb

PMCID:: PMC3940865

Abstract Article PDF–4.0M

Select item 372820918.

Gene-by-Temperature Interactions and Candidate Plasticity Genes for Morphological Traits in Drosophila melanogaster

Valeria Paula Carreira, Marcos A. Imberti, Julián Mensch, Juan José Fanara

PLoS One. 2013; 8(7): e70851. Published online 2013 Jul 30. doi: 10.1371/journal.pone.0070851

PMCID:: PMC3728209

Abstract Article PDF–1.4M

Select item 368399019.

The Drosophila melanogaster Genetic Reference Panel

Trudy F. C. Mackay, Stephen Richards, Eric A. Stone, Antonio Barbadilla, Julien F. Ayroles, Dianhui Zhu, Sònia Casillas, Yi Han, Michael M. Magwire, Julie M. Cridland, Mark F. Richardson, Robert R. H. Anholt, Maite Barrón, Crystal Bess, Kerstin Petra Blankenburg, Mary Anna Carbone, David Castellano, Lesley Chaboub, Laura Duncan, Zeke Harris, Mehwish Javaid, Joy Christina Jayaseelan, Shalini N. Jhangiani, Katherine W. Jordan, Fremiet Lara, Faye Lawrence, Sandra L. Lee, Pablo Librado, Raquel S. Linheiro, Richard F. Lyman, Aaron J. Mackey, Mala Munidasa, Donna Marie Muzny, Lynne Nazareth, Irene Newsham, Lora Perales, Ling-Ling Pu, Carson Qu, Miquel Ràmia, Jeffrey G. Reid, Stephanie M. Rollmann, Julio Rozas, Nehad Saada, Lavanya Turlapati, Kim C. Worley, Yuan-Qing Wu, Akihiko Yamamoto, Yiming Zhu, Casey M. Bergman, Kevin R. Thornton, David Mittelman, Richard A. Gibbs

Nature. Author manuscript; available in PMC 2013 Jun 17.

Published in final edited form as: Nature. 2012 Feb 9; 482(7384): 173–178. Published online 2012 Feb 8. doi: 10.1038/nature10811

PMCID:: PMC3683990

Abstract Article PDF–1016K

Select item 353067720.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

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