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Items: 1 to 20 of 41

1.
A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi
William W Fisher, Ann S Hammonds, Richard Weiszmann, Benjamin W Booth, Louis Gevirtzman, Jaeda E J Patton, Connor A Kubo, Robert H Waterston, Susan E Celniker
Genetics. 2023 Apr; 223(4): iyad004. Published online 2023 Jan 19. doi: 10.1093/genetics/iyad004
PMCID:
PMC10078917
AbstractArticlePDF–18M
2.
A comprehensive study of arthropod and onychophoran Fox gene expression patterns
Ralf Janssen, Christoph Schomburg, Nikola-Michael Prpic, Graham E. Budd
PLoS One. 2022; 17(7): e0270790. Published online 2022 Jul 8. doi: 10.1371/journal.pone.0270790
PMCID:
PMC9269926
AbstractArticlePDF–6.5M
3.
A complete temporal transcription factor series in the fly visual system
Nikolaos Konstantinides, Isabel Holguera, Anthony M. Rossi, Aristides Escobar, Liébaut Dudragne, Yen-Chung Chen, Thinh Tran, Azalia Martinez Jaimes, Mehmet Neset Özel, Félix Simon, Zhiping Shao, Nadejda M. Tsankova, John F. Fullard, Uwe Walldorf, Panos Roussos, Claude Desplan
Nature. Author manuscript; available in PMC 2022 Oct 6.
Published in final edited form as: Nature. 2022 Apr; 604(7905): 316–322. Published online 2022 Apr 6. doi: 10.1038/s41586-022-04564-w
PMCID:
PMC9074256
AbstractArticlePDF–5.5M
4.
Phylogenetic analysis of forkhead transcription factors in the Panarthropoda
Christoph Schomburg, Ralf Janssen, Nikola-Michael Prpic
Dev Genes Evol. 2022; 232(1): 39–48. Published online 2022 Mar 1. doi: 10.1007/s00427-022-00686-3
PMCID:
PMC8918179
AbstractArticlePDF–1.5M
5.
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk
Cell Rep. Author manuscript; available in PMC 2019 Apr 26.
Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071
PMCID:
PMC6485956
AbstractArticlePDF–1.6M
6.
Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila
Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet
eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853
PMCID:
PMC6177257
AbstractArticlePDF–4.9M
7.
Phenotypic convergence: distinct transcription factors regulate common terminal features
Nikolaos Konstantinides, Katarina Kapuralin, Chaimaa Fadil, Luendreo Barboza, Rahul Satija, Claude Desplan
Cell. Author manuscript; available in PMC 2019 Jul 26.
Published in final edited form as: Cell. 2018 Jul 26; 174(3): 622–635.e13. Published online 2018 Jun 18. doi: 10.1016/j.cell.2018.05.021
PMCID:
PMC6082168
AbstractArticlePDF–3.0M
8.
A Cyclin E Centered Genetic Network Contributes to Alcohol-Induced Variation in Drosophila Development
Tatiana V. Morozova, Yasmeen Hussain, Lenovia J. McCoy, Eugenea V. Zhirnov, Morgan R. Davis, Victoria A. Pray, Rachel A. Lyman, Laura H. Duncan, Anna McMillen, Aiden Jones, Trudy F. C. Mackay, Robert R. H. Anholt
G3 (Bethesda) 2018 Aug; 8(8): 2643–2653. Published online 2018 Jun 6. doi: 10.1534/g3.118.200260
PMCID:
PMC6071605
AbstractArticlePDF–1.6M
9.
A high throughput, functional screen of human Body Mass Index GWAS loci using tissue-specific RNAi Drosophila melanogaster crosses
Thomas J. Baranski, Aldi T. Kraja, Jill L. Fink, Mary Feitosa, Petra A. Lenzini, Ingrid B. Borecki, Ching-Ti Liu, L. Adrienne Cupples, Kari E. North, Michael A. Province
PLoS Genet. 2018 Apr; 14(4): e1007222. Published online 2018 Apr 2. doi: 10.1371/journal.pgen.1007222
PMCID:
PMC5897035
AbstractArticlePDF–2.3M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
12.
FOXD1-ALDH1A3 signaling is a determinant for the self-renewal and tumorigenicity of mesenchymal glioma stem cells
Peng Cheng, Jia Wang, Indrayani Waghmare, Stefania Sartini, Vito Coviello, Zhuo Zhang, Sung-Hak Kim, Ahmed Mohyeldin, Marat S. Pavlyukov, Mutsuko Minata, Claudia L. L. Valentim, Rishi Raj Chhipa, Krishna P.L. Bhat, Biplab Dasgupta, Concettina La Motta, Madhuri Kango-Singh, Ichiro Nakano
Cancer Res. Author manuscript; available in PMC 2017 Dec 15.
Published in final edited form as: Cancer Res. 2016 Dec 15; 76(24): 7219–7230. Published online 2016 Aug 28. doi: 10.1158/0008-5472.CAN-15-2860
PMCID:
PMC5161538
AbstractArticlePDF–1.5M
13.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
14.
Lineage mapping identifies molecular and architectural similarities between the larval and adult Drosophila central nervous system
Haluk Lacin, James W Truman
eLife. 2016; 5: e13399. Published online 2016 Mar 15. doi: 10.7554/eLife.13399
PMCID:
PMC4805552
AbstractArticlePDF–12M
15.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
17.
Transcription Factor Networks in Drosophila melanogaster
David Y. Rhee, Dong-Yeon Cho, Bo Zhai, Matthew Slattery, Lijia Ma, Julian Mintseris, Christina Y. Wong, Kevin P. White, Susan E. Celniker, Teresa M. Przytycka, Steven P. Gygi, Robert A. Obar, Spyros Artavanis-Tsakonas
Cell Rep. Author manuscript; available in PMC 2015 Apr 20.
Published in final edited form as: Cell Rep. 2014 Sep 25; 8(6): 2031–2043. Published online 2014 Sep 18. doi: 10.1016/j.celrep.2014.08.038
PMCID:
PMC4403667
AbstractArticlePDF–1.3M
18.
The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster
Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt
Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001
PMCID:
PMC4398050
AbstractArticlePDF–8.9M
19.
A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development
Claus Schertel, Monica Albarca, Claudia Rockel-Bauer, Nicholas W. Kelley, Johannes Bischof, Korneel Hens, Erik van Nimwegen, Konrad Basler, Bart Deplancke
Genome Res. 2015 Apr; 25(4): 514–523. doi: 10.1101/gr.181305.114
PMCID:
PMC4381523
AbstractArticlePDF–700K
20.
Conservation of transcription factor binding specificities across 600 million years of bilateria evolution
Kazuhiro R Nitta, Arttu Jolma, Yimeng Yin, Ekaterina Morgunova, Teemu Kivioja, Junaid Akhtar, Korneel Hens, Jarkko Toivonen, Bart Deplancke, Eileen E M Furlong, Jussi Taipale
eLife. 2015; 4: e04837. Published online 2015 Mar 17. doi: 10.7554/eLife.04837
PMCID:
PMC4362205
AbstractArticlePDF–3.7M

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