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Items: 17

1.
Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans
Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono
J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343
PMCID:
PMC9437848
AbstractArticlePDF–2.0M
2.
Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono
J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094
Correction in:
J Biol Chem. 2022 Jun; 298(6): 102081.
PMCID:
PMC8446793
AbstractArticlePDF–1.6M
3.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
4.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
5.
The type II integral ER membrane protein VAP-B homolog in C. elegans is cleaved to release the N-terminal MSP domain to signal non-cell-autonomously
Hala Zein-Sabatto, Tim Cole, Hieu D. Hoang, Ekta Tiwary, Chenbei Chang, Michael A. Miller
Dev Biol. Author manuscript; available in PMC 2022 Feb 1.
Published in final edited form as: Dev Biol. 2021 Feb; 470: 10–20. Published online 2020 Nov 5. doi: 10.1016/j.ydbio.2020.10.015
PMCID:
PMC7856274
AbstractArticlePDF–2.1M
6.
The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans
Stefanie Müthel, Bora Uyar, Mei He, Anne Krause, Burcu Vitrinel, Selman Bulut, Djordje Vasiljevic, Iris Marchal, Stefan Kempa, Altuna Akalin, Baris Tursun
Aging Cell. 2019 Dec; 18(6): e13012. Published online 2019 Aug 9. doi: 10.1111/acel.13012
PMCID:
PMC6826145
AbstractArticlePDF–3.0M
7.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
8.
Mitigating Motor Neuronal Loss in C. elegans Model of ALS8
Wendy Zhang, Antonio Colavita, Johnny K. Ngsee
Sci Rep. 2017; 7: 11582. Published online 2017 Sep 14. doi: 10.1038/s41598-017-11798-6
PMCID:
PMC5599522
AbstractArticlePDF–1.7M
9.
The C. elegans VAPB homolog VPR-1 is a permissive signal for gonad development
Pauline A. Cottee, Tim Cole, Jessica Schultz, Hieu D. Hoang, Jack Vibbert, Sung Min Han, Michael A. Miller
Development. 2017 Jun 15; 144(12): 2187–2199. doi: 10.1242/dev.152207
PMCID:
PMC5482997
AbstractArticle
10.
The secreted MSP domain of C. elegans VAPB homolog VPR-1 patterns the adult striated muscle mitochondrial reticulum via SMN-1
Jessica Schultz, Se-Jin Lee, Tim Cole, Hieu D. Hoang, Jack Vibbert, Pauline A. Cottee, Michael A. Miller, Sung Min Han
Development. 2017 Jun 15; 144(12): 2175–2186. doi: 10.1242/dev.152025
PMCID:
PMC5482996
AbstractArticle
11.
A combined binary interaction and phenotypic map of C. elegans cell polarity proteins
Thijs Koorman, Diana Klompstra, Monique van der Voet, Irma Lemmens, João J. Ramalho, Susan Nieuwenhuize, Sander van den Heuvel, Jan Tavernier, Jeremy Nance, Mike Boxem
Nat Cell Biol. Author manuscript; available in PMC 2016 Jul 18.
Published in final edited form as: Nat Cell Biol. 2016 Mar; 18(3): 337–346. Published online 2016 Jan 18. doi: 10.1038/ncb3300
PMCID:
PMC4767559
AbstractArticlePDF–1.7M
12.
Dissection of the Mammalian Midbody Proteome Reveals Conserved Cytokinesis Mechanisms
Ahna R. Skop, Hongbin Liu, John Yates, III, Barbara J. Meyer, Rebecca Heald
Science. Author manuscript; available in PMC 2013 Jun 12.
Published in final edited form as: Science. 2004 Jul 2; 305(5680): 61–66. Published online 2004 May 27. doi: 10.1126/science.1097931
PMCID:
PMC3679889
AbstractArticlePDF–1.5M
13.
Secreted VAPB/ALS8 major sperm protein domains modulate mitochondrial localization and morphology via growth cone guidance receptors
Sung Min Han, Hiroshi Tsuda, Youfeng Yang, Jack Vibbert, Pauline Cottee, Se-Jin Lee, Jessica Winek, Claire Haueter, Hugo J. Bellen, Michael A. Miller
Dev Cell. Author manuscript; available in PMC 2012 Aug 14.
Published in final edited form as: Dev Cell. 2012 Feb 14; 22(2): 348–362. Published online 2012 Jan 19. doi: 10.1016/j.devcel.2011.12.009
PMCID:
PMC3298687
AbstractArticlePDF–7.7M
14.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
15.
Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network
Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal
Nat Methods. Author manuscript; available in PMC 2011 Mar 15.
Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279
PMCID:
PMC3057923
AbstractArticlePDF–3.0M
16.
The Amyotrophic Lateral Sclerosis 8 protein VAPB is cleaved, secreted, and acts as a ligand for Eph receptors
Hiroshi Tsuda, Sung Min Han, Youfeng Yang, Chao Tong, Yong Qi Lin, Kriti Mohan, Claire Haueter, Anthony Zoghbi, Yadollah Harati, Justin Kwan, Michael A. Miller, Hugo J. Bellen
Cell. Author manuscript; available in PMC 2008 Dec 13.
Published in final edited form as: Cell. 2008 Jun 13; 133(6): 963–977. doi: 10.1016/j.cell.2008.04.039
PMCID:
PMC2494862
AbstractArticlePDF–11M
17.
A Map of the Interactome Network of the Metazoan C. elegans
Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2006 Dec 14.
Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403
PMCID:
PMC1698949
AbstractArticlePDF–1.4M

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