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Items: 1 to 20 of 26

1.
Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly
Marcos Schaan Profes, Araven Tiroumalechetty, Neel Patel, Stephanie S. Lauar, Simone Sidoli, Peri T. Kurshan
PLoS Biol. 2024 Jan; 22(1): e3002466. Published online 2024 Jan 22. doi: 10.1371/journal.pbio.3002466
PMCID:
PMC10802952
AbstractArticlePDF–2.7M
2.
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing
Doreen I. Lugano, Lindsey N. Barrett, Dale Chaput, Margaret A. Park, Sandy D. Westerheide
RNA Biol. 2024; 21(1): 1–11. Published online 2023 Dec 21. doi: 10.1080/15476286.2023.2289707
PMCID:
PMC10761121
AbstractArticlePDF–2.5M
3.
SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans
Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino
Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755
PMCID:
PMC10617626
AbstractArticle
4.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
5.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
6.
DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans
Kin Man Suen, Fabian Braukmann, Richard Butler, Dalila Bensaddek, Alper Akay, Chi-Chuan Lin, Dovilė Milonaitytė, Neel Doshi, Alexandra Sapetschnig, Angus Lamond, John Edward Ladbury, Eric Alexander Miska
Nat Commun. 2020; 11: 4242. Published online 2020 Aug 25. doi: 10.1038/s41467-020-18089-1
PMCID:
PMC7447803
AbstractArticlePDF–2.3M
7.
RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans
Chuanman Zhou, Xiaoyang Gao, Surong Hu, Wenjing Gan, Jing Xu, Yongchao C. Ma, Long Ma
RNA Biol. 2018; 15(10): 1295–1308. Published online 2018 Oct 13. doi: 10.1080/15476286.2018.1526540
PMCID:
PMC6284560
AbstractArticlePDF–2.1M
8.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
9.
The RNA-binding protein repertoire of Arabidopsis thaliana
Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring
Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766
PMCID:
PMC4942612
AbstractArticlePDF–1.2M
10.
In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics
Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach
Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975
PMCID:
PMC4858945
AbstractArticlePDF–3.1M
11.
Overview of gene structure.
John Spieth, Daniel Lawson
WormBook. 2006 : 1–10. Published online 2006 Jan 18. doi: 10.1895/wormbook.1.65.1
PMCID:
PMC4781370
AbstractArticle
12.
Alternative splicing in C. elegans.
Alan M Zahler
WormBook. 2005 : 1–13. Published online 2005 Sep 26. doi: 10.1895/wormbook.1.31.1
PMCID:
PMC4781185
AbstractArticle
13.
The survival motor neuron gene smn-1 interacts with the U2AF large subunit gene uaf-1 to regulate Caenorhabditis elegans lifespan and motor functions
Xiaoyang Gao, Yanling Teng, Jintao Luo, Liange Huang, Min Li, Zhuohua Zhang, Yong-Chao Ma, Long Ma
RNA Biol. 2014 Sep; 11(9): 1148–1160. Published online 2014 Oct 31. doi: 10.4161/rna.36100
PMCID:
PMC4615316
AbstractArticlePDF–1018K
14.
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
Anna Y. Zinovyeva, Isana Veksler-Lublinsky, Ajay A. Vashisht, James A. Wohlschlegel, Victor R. Ambros
Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38): E5271–E5280. Published online 2015 Sep 8. doi: 10.1073/pnas.1506576112
PMCID:
PMC4586838
AbstractArticlePDF–1.1M
15.
The WD40-repeat Proteins WDR-20 and WDR-48 Bind and Activate the Deubiquitinating Enzyme USP-46 to Promote the Abundance of the Glutamate Receptor GLR-1 in the Ventral Nerve Cord of Caenorhabditis elegans
Caroline L. Dahlberg, Peter Juo
J Biol Chem. 2014 Feb 7; 289(6): 3444–3456. Published online 2013 Dec 19. doi: 10.1074/jbc.M113.507541
PMCID:
PMC3916546
AbstractArticlePDF–1.3M
16.
TEG-1 CD2BP2 regulates stem cell proliferation and sex determination in the C. elegans germ line and physically interacts with the UAF-1 U2AF65 splicing factor
Chris Wang, Laura Wilson-Berry, Tim Schedl, Dave Hansen
Dev Dyn. Author manuscript; available in PMC 2013 Mar 1.
Published in final edited form as: Dev Dyn. 2012 Mar; 241(3): 505–521. Published online 2012 Jan 30. doi: 10.1002/dvdy.23735
PMCID:
PMC3466600
AbstractArticlePDF–4.7M
17.
The Caenorhabditis elegans Gene mfap-1 Encodes a Nuclear Protein That Affects Alternative Splicing
Long Ma, Xiaoyang Gao, Jintao Luo, Liange Huang, Yanling Teng, H. Robert Horvitz
PLoS Genet. 2012 Jul; 8(7): e1002827. Published online 2012 Jul 19. doi: 10.1371/journal.pgen.1002827
PMCID:
PMC3400559
AbstractArticlePDF–637K
18.
Sm protein down-regulation leads to defects in nuclear pore complex disassembly and distribution in C. elegans embryos
Daphna Joseph-Strauss, Mátyás Gorjánácz, Rachel Santarella-Mellwig, Ekaterina Voronina, Anjon Audhya, Orna Cohen-Fix
Dev Biol. Author manuscript; available in PMC 2013 May 15.
Published in final edited form as: Dev Biol. 2012 May 15; 365(2): 445–457. Published online 2012 Mar 8. doi: 10.1016/j.ydbio.2012.02.036
PMCID:
PMC3337357
AbstractArticlePDF–3.2M
19.
In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans
Long Ma, Zhiping Tan, Yanling Teng, Sebastian Hoersch, H. Robert Horvitz
RNA. 2011 Dec; 17(12): 2201–2211. doi: 10.1261/rna.027458.111
PMCID:
PMC3222132
AbstractArticlePDF–1.0M
20.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K

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