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Items: 13

1.
Identification of target genes regulated by the Drosophila histone methyltransferase Eggless reveals a role of Decapentaplegic in apoptotic signaling
Igojo Kang, Yourim Choi, Sueun Jung, Jae Yun Lim, Dooyoung Lee, Sumeet Gupta, Woongjoon Moon, Chanseok Shin
Sci Rep. 2018; 8: 7123. Published online 2018 May 8. doi: 10.1038/s41598-018-25483-9
PMCID:
PMC5940877
AbstractArticlePDF–1.6M
2.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
3.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
4.
Integrative analysis unveils new functions for the Drosophila Cutoff protein in noncoding RNA biogenesis and gene regulation
Yuri Pritykin, Tarcisio Brito, Trudi Schupbach, Mona Singh, Attilio Pane
RNA. 2017 Jul; 23(7): 1097–1109. doi: 10.1261/rna.058594.116
PMCID:
PMC5473144
AbstractArticlePDF–520K
5.
Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs
Ronit Wilk, Jack Hu, Dmitry Blotsky, Henry M. Krause
Genes Dev. 2016 Mar 1; 30(5): 594–609. doi: 10.1101/gad.276931.115
PMCID:
PMC4782052
AbstractArticlePDF–883K
6.
snoRNAs are a novel class of biologically relevant Myc targets
Eva K Herter, Maria Stauch, Maria Gallant, Elmar Wolf, Thomas Raabe, Peter Gallant
BMC Biol. 2015; 13: 25. Published online 2015 Apr 16. doi: 10.1186/s12915-015-0132-6
PMCID:
PMC4430873
AbstractArticlePDF–2.7M
7.
Diversity and dynamics of the Drosophila transcriptome
James B. Brown, Nathan Boley, Robert Eisman, Gemma E. May, Marcus H. Stoiber, Michael O. Duff, Ben W. Booth, Jiayu Wen, Soo Park, Ana Maria Suzuki, Kenneth H. Wan, Charles Yu, Dayu Zhang, Joseph W. Carlson, Lucy Cherbas, Brian D. Eads, David Miller, Keithanne Mockaitis, Johnny Roberts, Carrie A. Davis, Erwin Frise, Ann S. Hammonds, Sara Olson, Sol Shenker, David Sturgill, Anastasia A. Samsonova, Richard Weiszmann, Garret Robinson, Juan Hernandez, Justen Andrews, Peter J. Bickel, Piero Carninci, Peter Cherbas, Thomas R. Gingeras, Roger A. Hoskins, Thomas C. Kaufman, Eric C. Lai, Brian Oliver, Norbert Perrimon, Brenton R. Graveley, Susan E. Celniker
Nature. Author manuscript; available in PMC 2015 Feb 28.
Published in final edited form as: Nature. 2014 Aug 28; 512(7515): 393–399. doi: 10.1038/nature12962
PMCID:
PMC4152413
AbstractArticlePDF–987K
8.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
9.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
10.
Deep sequencing the circadian and diurnal transcriptome of Drosophila brain
Michael E. Hughes, Gregory R. Grant, Christina Paquin, Jack Qian, Michael N. Nitabach
Genome Res. 2012 Jul; 22(7): 1266–1281. doi: 10.1101/gr.128876.111
PMCID:
PMC3396368
AbstractArticlePDF–2.6M
11.
Comprehensive identification of Drosophila dorsal–ventral patterning genes using a whole-genome tiling array
Frédéric Biemar, David A. Nix, Jessica Piel, Brant Peterson, Matthew Ronshaugen, Victor Sementchenko, Ian Bell, J. Robert Manak, Michael S. Levine
Proc Natl Acad Sci U S A. 2006 Aug 22; 103(34): 12763–12768. Published online 2006 Aug 14. doi: 10.1073/pnas.0604484103
PMCID:
PMC1636694
AbstractArticlePDF–2.0M
12.
Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs
ZHAN-PENG HUANG, HUI ZHOU, HUA-LIANG HE, CHUN-LONG CHEN, DAN LIANG, LIANG-HU QU
RNA. 2005 Aug; 11(8): 1303–1316. doi: 10.1261/rna.2380905
PMCID:
PMC1370813
AbstractArticlePDF–1020K
13.
Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster
Jonathan L. Tupy, Adina M. Bailey, Gina Dailey, Martha Evans-Holm, Christian W. Siebel, Sima Misra, Susan E. Celniker, Gerald M. Rubin
Proc Natl Acad Sci U S A. 2005 Apr 12; 102(15): 5495–5500. Published online 2005 Apr 4. doi: 10.1073/pnas.0501422102
Correction in:
Proc Natl Acad Sci U S A. 2005 Jun 7; 102(23): 8392.
PMCID:
PMC555963
AbstractArticlePDF–310K

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