PMC Links for GEO Profiles (Select 45675862) - PMC

Karine Casier, Julie Autaa, Nathalie Gueguen, Valérie Delmarre, Pauline P. Marie, Stéphane Ronsseray, Clément Carré, Emilie Brasset, Laure Teysset, Antoine Boivin

Sci Adv. 2023 Apr; 9(14): eade3872. Published online 2023 Apr 7. doi: 10.1126/sciadv.ade3872

PMCID:: PMC10081847

Abstract Article PDF–1.7M

Select item 70503964.

Druggable genome screen identifies new regulators of the abundance and toxicity of ATXN3, the Spinocerebellar Ataxia Type 3 disease protein

Naila S. Ashraf, Joanna R. Sutton, Yemen Yang, Bedri Ranxhi, Kozeta Libohova, Emily D. Shaw, Anna J. Barget, Sokol V. Todi, Henry L. Paulson, Maria do Carmo Costa

Neurobiol Dis. Author manuscript; available in PMC 2020 Apr 1.

Published in final edited form as: Neurobiol Dis. 2020 Apr; 137: 104697. Published online 2019 Nov 26. doi: 10.1016/j.nbd.2019.104697

PMCID:: PMC7050396

Abstract Article PDF–2.7M

Select item 69615785.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 67063476.

Targeted Downregulation of kdm4a Ameliorates Tau-engendered Defects in Drosophila melanogaster

Sung Yeon Park, Jieun Seo, Yang-Sook Chun

J Korean Med Sci. 2019 Aug 26; 34(33): e225. Published online 2019 Aug 8. doi: 10.3346/jkms.2019.34.e225

PMCID:: PMC6706347

Abstract Article PDF–4.3M

Select item 59908797.

Epigenetic Mechanisms of Alcohol Neuroadaptation: Insights from Drosophila

Maria E Ramirez-Roman, Carlos E Billini, Alfredo Ghezzi

J Exp Neurosci. 2018; 12: 1179069518779809. Published online 2018 Jun 4. doi: 10.1177/1179069518779809

PMCID:: PMC5990879

Abstract Article PDF–641K

Select item 58862218.

Systematic genetic interaction studies identify histone demethylase Utx as potential target for ameliorating Huntington’s disease

Wan Song, Nóra Zsindely, Anikó Faragó, J Lawrence Marsh, László Bodai

Hum Mol Genet. 2018 Feb 15; 27(4): 649–666. Published online 2017 Dec 21. doi: 10.1093/hmg/ddx432

Correction in:: Hum Mol Genet. 2018 Feb 15; 27(4): 759.

PMCID:: PMC5886221

Abstract Article PDF–906K

Select item 57704259.

JmjC domain proteins modulate circadian behaviors and sleep in Drosophila

Nevine A. Shalaby, Jorge H. Pinzon, Anjana S. Narayanan, Eugene Jennifer Jin, Morgan P. Ritz, Rachel J. Dove, Heike Wolfenberg, Aylin R. Rodan, Michael Buszczak, Adrian Rothenfluh

Sci Rep. 2018; 8: 815. Published online 2018 Jan 16. doi: 10.1038/s41598-017-18989-1

PMCID:: PMC5770425

Abstract Article PDF–4.2M

Select item 571159010.

Alcohol-Induced Behaviors Require a Subset of Drosophila JmjC-Domain Histone Demethylases in the Nervous System

Jorge H. Pinzón, Addison R. Reed, Nevine A. Shalaby, Michael Buszczak, Aylin R. Rodan, Adrian Rothenfluh

Alcohol Clin Exp Res. Author manuscript; available in PMC 2018 Dec 1.

Published in final edited form as: Alcohol Clin Exp Res. 2017 Dec; 41(12): 2015–2024. Published online 2017 Oct 30. doi: 10.1111/acer.13508

PMCID:: PMC5711590

Abstract Article PDF–1.5M

Select item 570780511.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900212.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 550788313.

Systematic discovery of genetic modulation by Jumonji histone demethylases in Drosophila

Nevine A. Shalaby, Raheel Sayed, Qiao Zhang, Shane Scoggin, Susan Eliazer, Adrian Rothenfluh, Michael Buszczak

Sci Rep. 2017; 7: 5240. Published online 2017 Jul 12. doi: 10.1038/s41598-017-05004-w

PMCID:: PMC5507883

Abstract Article PDF–3.3M

Select item 473800514.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 459455215.

Histone lysine demethylases in Drosophila melanogaster

Andreana Holowatyj, Zeng-Quan Yang, Lori A Pile

Fly (Austin) 2015 Jan-Mar; 9(1): 36–44. Published online 2015 Jul 24. doi: 10.1080/19336934.2015.1074787

PMCID:: PMC4594552

Abstract Article PDF–326K

Select item 452833016.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832917.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 450819318.

Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling

Hans-Martin Herz, Marc Morgan, Xin Gao, Jessica Jackson, Ryan Rickels, Selene K. Swanson, Laurence Florens, Michael P. Washburn, Joel C. Eissenberg, Ali Shilatifard

Science. Author manuscript; available in PMC 2015 Jul 20.

Published in final edited form as: Science. 2014 Aug 29; 345(6200): 1065–1070. doi: 10.1126/science.1255104

PMCID:: PMC4508193

Abstract Article PDF–1.2M

Select item 435288719.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152720.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

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