PMC Links for GEO Profiles (Select 4467443) - PMC

Keith A. Lawson, Cristovão M. Sousa, Xiaoyu Zhang, Eiru Kim, Rummy Akthar, Joseph J. Caumanns, Yuxi Yao, Nicholas Mikolajewicz, Catherine Ross, Kevin R. Brown, Abdelrahman Abou Zid, Zi Peng Fan, Shirley Hui, Jordan A. Krall, Donald M. Simons, Chloe J. Slater, Victor De Jesus, Lujia Tang, Richa Singh, Joshua E. Goldford, Sarah Martin, Qian Huang, Elizabeth A. Francis, Andrea Habsid, Ryan Climie, David Tieu, Jiarun Wei, Ren Li, Amy Hin Yan Tong, Michael Aregger, Katherine S. Chan, Hong Han, Xiaowei Wang, Patricia Mero, John H. Brumell, Antonio Finelli, Laurie Ailles, Gary Bader, Gromoslaw A. Smolen, Gillian A. Kingsbury, Traver Hart, Charles Kung, Jason Moffat

Nature. Author manuscript; available in PMC 2022 Apr 18.

Published in final edited form as: Nature. 2020 Oct; 586(7827): 120–126. Published online 2020 Sep 23. doi: 10.1038/s41586-020-2746-2

PMCID:: PMC9014559

Abstract Article PDF–6.6M

Select item 86696134.

SdhA blocks disruption of the Legionella-containing vacuole by hijacking the OCRL phosphatase

Won Young Choi, Seongok Kim, Philipp Aurass, Wenwen Huo, Elizabeth A. Creasey, Marc Edwards, Martin Lowe, Ralph R. Isberg

Cell Rep. Author manuscript; available in PMC 2021 Dec 14.

Published in final edited form as: Cell Rep. 2021 Nov 2; 37(5): 109894. doi: 10.1016/j.celrep.2021.109894

PMCID:: PMC8669613

Abstract Article PDF–1.8M

Select item 84638065.

Aire regulates chromatin looping by evicting CTCF from domain boundaries and favoring accumulation of cohesin on superenhancers

Kushagra Bansal, Daniel A. Michelson, Ricardo N. Ramirez, Aaron D. Viny, Ross L. Levine, Christophe Benoist, Diane Mathis

Proc Natl Acad Sci U S A. 2021 Sep 21; 118(38): e2110991118. Published online 2021 Sep 13. doi: 10.1073/pnas.2110991118

PMCID:: PMC8463806

Abstract Article PDF–5.3M

Select item 84064016.

OCRL regulates lysosome positioning and mTORC1 activity through SSX2IP‐mediated microtubule anchoring

Biao Wang, Wei He, Philipp P Prosseda, Liang Li, Tia J Kowal, Jorge A Alvarado, Qing Wang, Yang Hu, Yang Sun

EMBO Rep. 2021 Jul 5; 22(7): e52173. Published online 2021 May 13. doi: 10.15252/embr.202052173

PMCID:: PMC8406401

Abstract Article PDF–3.1M

Select item 82921667.

A functional taxonomy of tumor suppression in oncogenic KRAS-driven lung cancer

Hongchen Cai, Su Kit Chew, Chuan Li, Min K. Tsai, Laura Andrejka, Christopher W. Murray, Nicholas W. Hughes, Emily G. Shuldiner, Emily L. Ashkin, Rui Tang, King L. Hung, Leo C. Chen, Shi Ya C. Lee, Maryam Yousefi, Wen-Yang Lin, Christian A. Kunder, Le Cong, Christopher D. McFarland, Dmitri A. Petrov, Charles Swanton, Monte M. Winslow

Cancer Discov. Author manuscript; available in PMC 2022 Jan 1.

Published in final edited form as: Cancer Discov. 2021 Jul; 11(7): 1754–1773. Published online 2021 Feb 19. doi: 10.1158/2159-8290.CD-20-1325

PMCID:: PMC8292166

Abstract Article PDF–3.3M

Select item 79387708.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 74986799.

An Alternative Splicing Program for Mouse Craniofacial Development

Joan E. Hooper, Kenneth L. Jones, Francis J. Smith, Trevor Williams, Hong Li

Front Physiol. 2020; 11: 1099. Published online 2020 Sep 4. doi: 10.3389/fphys.2020.01099

PMCID:: PMC7498679

Abstract Article PDF–4.5M

Select item 741833310.

Distinct and overlapping roles of STAG1 and STAG2 in cohesin localization and gene expression in embryonic stem cells

Nicole L. Arruda, Zachary M. Carico, Megan Justice, Ying Frances Liu, Junjie Zhou, Holden C. Stefan, Jill M. Dowen

Epigenetics Chromatin. 2020; 13: 32. Published online 2020 Aug 10. doi: 10.1186/s13072-020-00353-9

PMCID:: PMC7418333

Abstract Article PDF–11M

Select item 736849411.

The sperm associated antigen 6 interactome and its role in spermatogenesis

Yunhao Liu, Ling Zhang, Wei Li, Yuhong Li, Junpin Liu, Shiyang Zhang, Guanglun Pin, Shizhen Song, Pierre F Ray, Christophe Arnoult, Chunghee Cho, Balbina Garcia-Reyes, Uwe Knippschild, Jerome F. Strauss, III, Zhibing Zhang

Reproduction. Author manuscript; available in PMC 2020 Jul 18.

Published in final edited form as: Reproduction. 2019 Aug; 158(2): 181–197. doi: 10.1530/REP-18-0522

PMCID:: PMC7368494

Abstract Article PDF–1.8M

Select item 726982012.

Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes

Yotaro Ochi, Ayana Kon, Toyonori Sakata, Masahiro M Nakagawa, Naotaka Nakazawa, Masanori Kakuta, Keisuke Kataoka, Haruhiko Koseki, Manabu Nakayama, Daisuke Morishita, Tatsuaki Tsuruyama, Ryunosuke Saiki, Akinori Yoda, Rurika Okuda, Tetsuichi Yoshizato, Kenichi Yoshida, Yusuke Shiozawa, Yasuhito Nannya, Shinichi Kotani, Yasunori Kogure, Nobuyuki Kakiuchi, Tomomi Nishimura, Hideki Makishima, Luca Malcovati, Akihiko Yokoyama, Kengo Takeuchi, Eiji Sugihara, Taka-aki Sato, Masashi Sanada, Akifumi Takaori-Kondo, Mario Cazzola, Mineko Kengaku, Satoru Miyano, Katsuhiko Shirahige, Hiroshi I Suzuki, Seishi Ogawa

Cancer Discov. Author manuscript; available in PMC 2020 Dec 1.

Published in final edited form as: Cancer Discov. 2020 Jun; 10(6): 836–853. Published online 2020 Apr 5. doi: 10.1158/2159-8290.CD-19-0982

PMCID:: PMC7269820

Abstract Article PDF–3.2M

Select item 694135013.

Loss of Stag2 cooperates with EWS-FLI1 to transform murine Mesenchymal stem cells

Marc El Beaino, Jiayong Liu, Amanda R. Wasylishen, Rasoul Pourebrahim, Agata Migut, Bryan J. Bessellieu, Ke Huang, Patrick P. Lin

BMC Cancer. 2020; 20: 3. Published online 2020 Jan 2. doi: 10.1186/s12885-019-6465-8

PMCID:: PMC6941350

Abstract Article PDF–6.2M

Select item 684243814.

Cohesin members Stag1 and Stag2 display distinct roles in chromatin accessibility and topological control of HSC self-renewal and differentiation

Aaron D. Viny, Robert L. Bowman, Yu Liu, Vincent-Philippe Lavallée, Shira E. Eisman, Wenbin Xiao, Benjamin H. Durham, Anastasia Navitski, Jane Park, Stephanie Braunstein, Besmira Alija, Abdul Karzai, Isabelle S. Csete, Matthew Witkin, Elham Azizi, Timour Baslan, Christopher J. Ott, Dana Pe’er, Job Dekker, Richard Koche, Ross L. Levine

Cell Stem Cell. Author manuscript; available in PMC 2020 Nov 7.

Published in final edited form as: Cell Stem Cell. 2019 Nov 7; 25(5): 682–696.e8. Published online 2019 Sep 5. doi: 10.1016/j.stem.2019.08.003

PMCID:: PMC6842438

Abstract Article PDF–3.4M

Select item 672539415.

Telencephalic Embryonic Subtractive Sequences: A Unique Collection of Neurodevelopmental Genes

Alessandro Bulfone, Pietro Carotenuto, Andrea Faedo, Veruska Aglio, Livia Garzia, Anna Maria Bello, Andrea Basile, Alessandra Andrè, Massimo Cocchia, Ombretta Guardiola, Andrea Ballabio, John L. R. Rubenstein, Massimo Zollo

J Neurosci. 2005 Aug 17; 25(33): 7586–7600. doi: 10.1523/JNEUROSCI.0522-05.2005

PMCID:: PMC6725394

Abstract Article PDF–682K

Select item 654822616.

OCRL deficiency impairs endolysosomal function in a humanized mouse model for Lowe syndrome and Dent disease

Beatrice Paola Festa, Marine Berquez, Alkaly Gassama, Irmgard Amrein, Hesham M Ismail, Marijana Samardzija, Leopoldo Staiano, Alessandro Luciani, Christian Grimm, Robert L Nussbaum, Maria Antonietta De Matteis, Olivier M Dorchies, Leonardo Scapozza, David Paul Wolfer, Olivier Devuyst

Hum Mol Genet. 2019 Jun 15; 28(12): 1931–1946. Published online 2018 Dec 26. doi: 10.1093/hmg/ddy449

PMCID:: PMC6548226

Abstract Article PDF–48M

Select item 629400117.

miR-122 removal in the liver activates imprinted microRNAs and enables more effective microRNA-mediated gene repression

Paul N. Valdmanis, Hak Kyun Kim, Kirk Chu, Feijie Zhang, Jianpeng Xu, Elizabeth M. Munding, Jia Shen, Mark A. Kay

Nat Commun. 2018; 9: 5321. Published online 2018 Dec 14. doi: 10.1038/s41467-018-07786-7

PMCID:: PMC6294001

Abstract Article PDF–859K

Select item 568788618.

ESRP1 mutations cause hearing loss due to defects in alternative splicing that disrupt cochlear development

Alex M. Rohacek, Thomas W. Bebee, Richard K. Tilton, Caleb M. Radens, Chris McDermott-Roe, Natoya Peart, Maninder Kaur, Michael Zaykaner, Benjamin Cieply, Kiran Musunuru, Yoseph Barash, John A. Germiller, Ian D. Krantz, Russ P. Carstens, Douglas J. Epstein

Dev Cell. Author manuscript; available in PMC 2018 Nov 6.

Published in final edited form as: Dev Cell. 2017 Nov 6; 43(3): 318–331.e5. Published online 2017 Oct 26. doi: 10.1016/j.devcel.2017.09.026

PMCID:: PMC5687886

Abstract Article PDF–2.4M

Select item 540773319.

Kidney Tubular Ablation of Ocrl/Inpp5b Phenocopies Lowe Syndrome Tubulopathy

Kazunori Inoue, Daniel M. Balkin, Lijuan Liu, Ramiro Nandez, Yumei Wu, Xuefei Tian, Tong Wang, Robert Nussbaum, Pietro De Camilli, Shuta Ishibe

J Am Soc Nephrol. 2017 May; 28(5): 1399–1407. Published online 2016 Nov 28. doi: 10.1681/ASN.2016080913

PMCID:: PMC5407733

Abstract Article

Select item 422640320.

Quantitative analysis of cohesin complex stoichiometry and SMC3 modification-dependent protein interactions

Chen Ding, Yehua Li, Beom-Jun Kim, Anna Malovannaya, Sung Yun Jung, Yi Wang, Jun Qin

J Proteome Res. Author manuscript; available in PMC 2014 Nov 10.

Published in final edited form as: J Proteome Res. 2011 Aug 5; 10(8): 3652–3659. Published online 2011 Jul 8. doi: 10.1021/pr2002758

PMCID:: PMC4226403

Abstract Article PDF–1017K

PMC

Result Filters

Article attributes

Text availability

Publication date

Custom date range

Research Funder

Additional filters

Display Settings:

Send to:

Links from GEO Profiles

Items: 1 to 20 of 54

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity