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Items: 1 to 20 of 86

1.
DSBSO-Based XL-MS Analysis of Breast Cancer PDX Tissues to Delineate Protein Interaction Network in Clinical Samples
Fenglong Jiao, Clinton Yu, Andrew Wheat, Lijun Chen, Tung-Shing Mamie Lih, Hui Zhang, Lan Huang
J Proteome Res. Author manuscript; available in PMC 2024 Aug 3.
Published in final edited form as: J Proteome Res. 2024 Aug 2; 23(8): 3269–3279. Published online 2024 Feb 9. doi: 10.1021/acs.jproteome.3c00832
PMCID:
PMC11296914
AbstractArticlePDF–1.7M
2.
Interaction network of human early embryonic transcription factors
Lisa Gawriyski, Zenglai Tan, Xiaonan Liu, Iftekhar Chowdhury, Dicle Malaymar Pinar, Qin Zhang, Jere Weltner, Eeva-Mari Jouhilahti, Gong-Hong Wei, Juha Kere, Markku Varjosalo
EMBO Rep. 2024 Mar; 25(3): 1589–1622. Published online 2024 Jan 31. doi: 10.1038/s44319-024-00074-0
PMCID:
PMC10933267
AbstractArticlePDF–2.9M
3.
KDM5 family of demethylases promotes CD44-mediated chemoresistance in pancreatic adenocarcinomas
Dan Wang, Yingjun Zhang, Zhouning Liao, Heming Ge, Cenap Güngör, Yuqiang Li
Sci Rep. 2023; 13: 18250. Published online 2023 Oct 25. doi: 10.1038/s41598-023-44536-2
PMCID:
PMC10600175
AbstractArticlePDF–5.5M
4.
Pulse-SILAC and Interactomics Reveal Distinct DDB1-CUL4–Associated Factors, Cellular Functions, and Protein Substrates
Jennifer Raisch, Marie-Line Dubois, Marika Groleau, Dominique Lévesque, Thomas Burger, Carla-Marie Jurkovic, Romain Brailly, Gwendoline Marbach, Alyson McKenna, Catherine Barrette, Pierre-Étienne Jacques, François-Michel Boisvert
Mol Cell Proteomics. 2023 Oct; 22(10): 100644. Published online 2023 Sep 7. doi: 10.1016/j.mcpro.2023.100644
PMCID:
PMC10565876
AbstractArticlePDF–3.7M
5.
Fbxo22 inhibits metastasis in triple-negative breast cancer through ubiquitin modification of KDM5A and regulation of H3K4me3 demethylation
Siqiaozhi Li, Jinsong He, Xin Liao, Yixuan He, Rui Chen, Junhui Chen, Sean Hu, Jia Sun
Cell Biol Toxicol. 2023; 39(4): 1641–1655. Published online 2022 Sep 16. doi: 10.1007/s10565-022-09754-w
PMCID:
PMC10425479
AbstractArticlePDF–2.0M
6.
Drawing a line between histone demethylase KDM5A and KDM5B: their roles in development and tumorigenesis
Jung Yoo, Go Woon Kim, Yu Hyun Jeon, Ji Yoon Kim, Sang Wu Lee, So Hee Kwon
Exp Mol Med. 2022 Dec; 54(12): 2107–2117. Published online 2022 Dec 12. doi: 10.1038/s12276-022-00902-0
PMCID:
PMC9794821
AbstractArticlePDF–2.1M
7.
HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation
Jingsheng Yuan, Tao Lv, Jian Yang, Zhenru Wu, Lvnan Yan, Jiayin Yang, Yujun Shi, Li Jiang
Cell Mol Gastroenterol Hepatol. 2023; 15(2): 307–325. Published online 2022 Oct 14. doi: 10.1016/j.jcmgh.2022.10.005
PMCID:
PMC9772558
AbstractArticlePDF–8.2M
8.
A Degradation Motif in STAU1 Defines a Novel Family of Proteins Involved in Inflammation
Yulemi Gonzalez Quesada, Luc DesGroseillers
Int J Mol Sci. 2022 Oct; 23(19): 11588. Published online 2022 Sep 30. doi: 10.3390/ijms231911588
PMCID:
PMC9569955
AbstractArticlePDF–2.1M
9.
The in vivo Interaction Landscape of Histones H3.1 and H3.3
Robert Siddaway, Scott Milos, Étienne Coyaud, Hwa Young Yun, Shahir M. Morcos, Sanja Pajovic, Eric I. Campos, Brian Raught, Cynthia Hawkins
Mol Cell Proteomics. 2022 Oct; 21(10): 100411. Published online 2022 Sep 9. doi: 10.1016/j.mcpro.2022.100411
PMCID:
PMC9540345
AbstractArticlePDF–3.9M
10.
KDM5A inhibits antitumor immune responses through downregulation of the antigen-presentation pathway in ovarian cancer
Heng Liu, Jianhuang Lin, Wei Zhou, Renyta Moses, Zhongping Dai, Andrew V. Kossenkov, Ronny Drapkin, Benjamin G. Bitler, Sergey Karakashev, Rugang Zhang
Cancer Immunol Res. Author manuscript; available in PMC 2023 Feb 3.
Published in final edited form as: Cancer Immunol Res. 2022 Aug 3; 10(8): 1028–1038. doi: 10.1158/2326-6066.CIR-22-0088
PMCID:
PMC9357105
AbstractArticlePDF–824K
11.
Chr21 protein–protein interactions: enrichment in proteins involved in intellectual disability, autism, and late-onset Alzheimer’s disease
Julia Viard, Yann Loe-Mie, Rachel Daudin, Malik Khelfaoui, Christine Plancon, Anne Boland, Francisco Tejedor, Richard L Huganir, Eunjoon Kim, Makoto Kinoshita, Guofa Liu, Volker Haucke, Thomas Moncion, Eugene Yu, Valérie Hindie, Henri Bléhaut, Clotilde Mircher, Yann Herault, Jean-François Deleuze, Jean-Christophe Rain, Michel Simonneau, Aude-Marie Lepagnol-Bestel
Life Sci Alliance. 2022 Dec; 5(12): e202101205. Published online 2022 Aug 1. doi: 10.26508/lsa.202101205
PMCID:
PMC9348576
AbstractArticlePDF–3.0M
12.
OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization
Nathan H. Cho, Keith C. Cheveralls, Andreas-David Brunner, Kibeom Kim, André C. Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y. Li, Hera Canaj, James Y.S. Kim, Edna M. Stewart, Christian Gnann, Frank McCarthy, Joana P. Cabrera, Rachel M. Brunetti, Bryant B. Chhun, Greg Dingle, Marco Y. Hein, Bo Huang, Shalin B. Mehta, Jonathan S. Weissman, Rafael Gómez-Sjöberg, Daniel N. Itzhak, Loic A. Royer, Matthias Mann, Manuel D. Leonetti
Science. Author manuscript; available in PMC 2022 Sep 11.
Published in final edited form as: Science. 2022 Mar 11; 375(6585): eabi6983. Published online 2022 Mar 11. doi: 10.1126/science.abi6983
PMCID:
PMC9119736
AbstractArticlePDF–3.3M
13.
Human transcription factor protein interaction networks
Helka Göös, Matias Kinnunen, Kari Salokas, Zenglai Tan, Xiaonan Liu, Leena Yadav, Qin Zhang, Gong-Hong Wei, Markku Varjosalo
Nat Commun. 2022; 13: 766. Published online 2022 Feb 9. doi: 10.1038/s41467-022-28341-5
PMCID:
PMC8828895
AbstractArticlePDF–1.7M
14.
TSG Targeting KDM5A Affects Osteogenic Differentiation of Bone Mesenchymal Stem Cells Induced by Bone Morphogenetic Protein 2
Min Wei, Yi Jiang, Yuanqing Huang
J Healthc Eng. 2022; 2022: 6472864. Published online 2022 Jan 25. doi: 10.1155/2022/6472864
PMCID:
PMC8808180
AbstractArticlePDF–1.8M
15.
KDM5A suppresses PML-RARα target gene expression and APL differentiation through repressing H3K4me2
Siyuan Xu, Siqing Wang, Shenghui Xing, Dingdang Yu, Bowen Rong, Hai Gao, Mengyao Sheng, Yun Tan, Yifan Zhang, Xiaojian Sun, Kankan Wang, Kai Xue, Zhennan Shi, Fei Lan
Blood Adv. 2021 Sep 14; 5(17): 3241–3253. Published online 2021 Aug 27. doi: 10.1182/bloodadvances.2020002819
Correction in:
Blood Adv. 2022 Apr 12; 6(7): 2443.
PMCID:
PMC8525237
AbstractArticlePDF–2.1M
16.
Lysine Demethylase 5A Is Required for MYC-Driven Transcription in Multiple Myeloma
Hiroto Ohguchi, Paul M.C. Park, Tingjian Wang, Berkley E. Gryder, Daisuke Ogiya, Keiji Kurata, Xiaofeng Zhang, Deyao Li, Chengkui Pei, Takeshi Masuda, Catrine Johansson, Virangika K. Wimalasena, Yong Kim, Shinjiro Hino, Shingo Usuki, Yawara Kawano, Mehmet K. Samur, Yu-Tzu Tai, Nikhil C. Munshi, Masao Matsuoka, Sumio Ohtsuki, Mitsuyoshi Nakao, Takashi Minami, Shannon Lauberth, Javed Khan, Udo Oppermann, Adam D. Durbin, Kenneth C. Anderson, Teru Hideshima, Jun Qi
Blood Cancer Discov. 2021 Jul; 2(4): 370–387. Published online 2021 Apr 10. doi: 10.1158/2643-3230.BCD-20-0108
PMCID:
PMC8265280
AbstractArticlePDF–7.0M
17.
KDM5A and KDM5B histone-demethylases contribute to HU-induced replication stress response and tolerance
Solenne Gaillard, Virginie Charasson, Cyril Ribeyre, Kader Salifou, Marie-Jeanne Pillaire, Jean-Sebastien Hoffmann, Angelos Constantinou, Didier Trouche, Marie Vandromme
Biol Open. 2021 May 15; 10(5): bio057729. Published online 2021 May 26. doi: 10.1242/bio.057729
PMCID:
PMC8181900
AbstractArticlePDF–5.6M
18.
Exploring the Ligand Preferences of the PHD1 Domain of Histone Demethylase KDM5A Reveals Tolerance for Modifications of the Q5 Residue of Histone 3
Sarah E. Anderson, James E. Longbotham, Patrick T. O’Kane, Fatima S. Ugur, Danica Galonić Fujimori, Milan Mrksich
ACS Chem Biol. Author manuscript; available in PMC 2022 Jan 15.
Published in final edited form as: ACS Chem Biol. 2021 Jan 15; 16(1): 205–213. Published online 2020 Dec 14. doi: 10.1021/acschembio.0c00891
PMCID:
PMC8168426
AbstractArticlePDF–1.5M
19.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
20.
Poly(ADP-ribose) binding and macroH2A mediate recruitment and functions of KDM5A at DNA lesions
Ramhari Kumbhar, Anthony Sanchez, Jullian Perren, Fade Gong, David Corujo, Frank Medina, Sravan K. Devanathan, Blerta Xhemalce, Andreas Matouschek, Marcus Buschbeck, Bethany A. Buck-Koehntop, Kyle M. Miller
J Cell Biol. 2021 Jul 5; 220(7): e202006149. Published online 2021 May 18. doi: 10.1083/jcb.202006149
PMCID:
PMC8135068
AbstractArticlePDF–6.1M

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