PMC Links for GEO Profiles (Select 44251199) - PMC

Select item 53154071.

Instrument design and protocol for the study of light controlled processes in aquatic organisms, and its application to examine the effect of infrared light on zebrafish

Marcus P. S. Dekens, Nicholas S. Foulkes, Kristin Tessmar-Raible

PLoS One. 2017; 12(2): e0172038. Published online 2017 Feb 17. doi: 10.1371/journal.pone.0172038

PMCID:: PMC5315407

Abstract Article PDF–2.9M

Select item 48172292.

The spotted gar genome illuminates vertebrate evolution and facilitates human-to-teleost comparisons

Ingo Braasch, Andrew R. Gehrke, Jeramiah J. Smith, Kazuhiko Kawasaki, Tereza Manousaki, Jeremy Pasquier, Angel Amores, Thomas Desvignes, Peter Batzel, Julian Catchen, Aaron M. Berlin, Michael S. Campbell, Daniel Barrell, Kyle J. Martin, John F. Mulley, Vydianathan Ravi, Alison P. Lee, Tetsuya Nakamura, Domitille Chalopin, Shaohua Fan, Dustin Wcisel, Cristian Cañestro, Jason Sydes, Felix E. G. Beaudry, Yi Sun, Jana Hertel, Michael J. Beam, Mario Fasold, Mikio Ishiyama, Jeremy Johnson, Steffi Kehr, Marcia Lara, John H. Letaw, Gary W. Litman, Ronda T. Litman, Masato Mikami, Tatsuya Ota, Nil Ratan Saha, Louise Williams, Peter F. Stadler, Han Wang, John S. Taylor, Quenton Fontenot, Allyse Ferrara, Stephen M. J. Searle, Bronwen Aken, Mark Yandell, Igor Schneider, Jeffrey A. Yoder, Jean-Nicolas Volff, Axel Meyer, Chris T. Amemiya, Byrappa Venkatesh, Peter W. H. Holland, Yann Guiguen, Julien Bobe, Neil H. Shubin, Federica Di Palma, Jessica Alföldi, Kerstin Lindblad-Toh, John H. Postlethwait

Nat Genet. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Genet. 2016 Apr; 48(4): 427–437. Published online 2016 Mar 7. doi: 10.1038/ng.3526

PMCID:: PMC4817229

Abstract Article PDF–2.6M

Select item 47619273.

Progestins alter photo-transduction cascade and circadian rhythm network in eyes of zebrafish (Danio rerio)

Yanbin Zhao, Karl Fent

Sci Rep. 2016; 6: 21559. Published online 2016 Feb 22. doi: 10.1038/srep21559

PMCID:: PMC4761927

Abstract Article PDF–1.8M

Select item 35165434.

Regulation of per and cry Genes Reveals a Central Role for the D-Box Enhancer in Light-Dependent Gene Expression

Philipp Mracek, Cristina Santoriello, M. Laura Idda, Cristina Pagano, Zohar Ben-Moshe, Yoav Gothilf, Daniela Vallone, Nicholas S. Foulkes

PLoS One. 2012; 7(12): e51278. Published online 2012 Dec 6. doi: 10.1371/journal.pone.0051278

PMCID:: PMC3516543

Abstract Article PDF–1.7M

Select item 31780595.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 30396566.

The Light Responsive Transcriptome of the Zebrafish: Function and Regulation

Benjamin D. Weger, Meltem Sahinbas, Georg W. Otto, Philipp Mracek, Olivier Armant, Dirk Dolle, Kajori Lahiri, Daniela Vallone, Laurence Ettwiller, Robert Geisler, Nicholas S. Foulkes, Thomas Dickmeis

PLoS One. 2011; 6(2): e17080. Published online 2011 Feb 15. doi: 10.1371/journal.pone.0017080

PMCID:: PMC3039656

Abstract Article PDF–2.0M

Select item 29353597.

Thyrotroph Embryonic Factor Regulates Light-Induced Transcription of Repair Genes in Zebrafish Embryonic Cells

Daria Gavriouchkina, Sabine Fischer, Tomi Ivacevic, Jens Stolte, Vladimir Benes, Marcus P. S. Dekens

PLoS One. 2010; 5(9): e12542. Published online 2010 Sep 7. doi: 10.1371/journal.pone.0012542

PMCID:: PMC2935359

Abstract Article PDF–2.6M

Select item 27590018.

Light Directs Zebrafish period2 Expression via Conserved D and E Boxes

Gad Vatine, Daniela Vallone, Lior Appelbaum, Philipp Mracek, Zohar Ben-Moshe, Kajori Lahiri, Yoav Gothilf, Nicholas S. Foulkes

PLoS Biol. 2009 Oct; 7(10): e1000223. Published online 2009 Oct 27. doi: 10.1371/journal.pbio.1000223

PMCID:: PMC2759001

Abstract Article PDF–1.9M

Select item 27023199.

Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication

Yukuto Sato, Yasuyuki Hashiguchi, Mutsumi Nishida

BMC Evol Biol. 2009; 9: 127. Published online 2009 Jun 5. doi: 10.1186/1471-2148-9-127

PMCID:: PMC2702319

Abstract Article PDF–1.2M

Select item 119954610.

The zebrafish gene map defines ancestral vertebrate chromosomes

Ian G. Woods, Catherine Wilson, Brian Friedlander, Patricia Chang, Daengnoy K. Reyes, Rebecca Nix, Peter D. Kelly, Felicia Chu, John H. Postlethwait, William S. Talbot

Genome Res. 2005 Sep; 15(9): 1307–1314. doi: 10.1101/gr.4134305

PMCID:: PMC1199546

Abstract Article PDF–595K

Select item 13924111.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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