PMC Links for GEO Profiles (Select 44234801) - PMC

Yun-Fei Li, Tao Cheng, Ying-Jie Zhang, Xin-Xin Fu, Jing Mo, Guo-Qin Zhao, Mao-Guang Xue, Ding-Hao Zhuo, Yan-Yi Xing, Ying Huang, Xiao-Zhi Sun, Dan Wang, Xiang Liu, Yang Dong, Xiao-Sheng Zhu, Feng He, Jun Ma, Dong Chen, Xi Jin, Peng-Fei Xu

PLoS Biol. 2022 Nov; 20(11): e3001856. Published online 2022 Nov 1. doi: 10.1371/journal.pbio.3001856

PMCID:: PMC9624419

Abstract Article PDF–3.7M

Select item 91918964.

Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary

Yulong Liu, Michelle E Kossack, Matthew E McFaul, Lana N Christensen, Stefan Siebert, Sydney R Wyatt, Caramai N Kamei, Samuel Horst, Nayeli Arroyo, Iain A Drummond, Celina E Juliano, Bruce W Draper

eLife. 2022; 11: e76014. Published online 2022 May 19. doi: 10.7554/eLife.76014

PMCID:: PMC9191896

Abstract Article PDF–13M

Select item 85267495.

Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis

Saurabh J. Pradhan, Puli Chandramouli Reddy, Michael Smutny, Ankita Sharma, Keisuke Sako, Meghana S. Oak, Rini Shah, Mrinmoy Pal, Ojas Deshpande, Greg Dsilva, Yin Tang, Rakesh Mishra, Girish Deshpande, Antonio J. Giraldez, Mahendra Sonawane, Carl-Philipp Heisenberg, Sanjeev Galande

Nat Commun. 2021; 12: 6094. Published online 2021 Oct 19. doi: 10.1038/s41467-021-26234-7

PMCID:: PMC8526749

Abstract Article PDF–6.8M

Select item 80152426.

The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish

John H. Postlethwait, Michelle S. Massaquoi, Dylan R. Farnsworth, Yi-Lin Yan, Karen Guillemin, Adam C. Miller

Biol Open. 2021 Mar 15; 10(3): bio058172. Published online 2021 Mar 23. doi: 10.1242/bio.058172

PMCID:: PMC8015242

Abstract Article PDF–5.8M

Select item 77284417.

Optogenetic investigation of BMP target gene expression diversity

Katherine W Rogers, Mohammad ElGamacy, Benjamin M Jordan, Patrick Müller

eLife. 2020; 9: e58641. Published online 2020 Nov 11. doi: 10.7554/eLife.58641

PMCID:: PMC7728441

Abstract Article PDF–3.3M

Select item 72363758.

RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

Boyang Shi, Jinsong Zhang, Jian Heng, Jing Gong, Ting Zhang, Pan Li, Bao-Fa Sun, Ying Yang, Ning Zhang, Yong-Liang Zhao, Hai-Lin Wang, Feng Liu, Qiangfeng Cliff Zhang, Yun-Gui Yang

Genome Biol. 2020; 21: 120. Published online 2020 May 18. doi: 10.1186/s13059-020-02022-2

PMCID:: PMC7236375

Abstract Article PDF–3.1M

Select item 71906599.

Inferring spatial and signaling relationships between cells from single cell transcriptomic data

Zixuan Cang, Qing Nie

Nat Commun. 2020; 11: 2084. Published online 2020 Apr 29. doi: 10.1038/s41467-020-15968-5

PMCID:: PMC7190659

Abstract Article PDF–3.2M

Select item 700214010.

Midkine-a Is Required for Cell Cycle Progression of Müller Glia during Neuronal Regeneration in the Vertebrate Retina

Mikiko Nagashima, Travis S. D'Cruz, Antoinette E. Danku, Doneen Hesse, Christopher Sifuentes, Pamela A. Raymond, Peter F. Hitchcock

J Neurosci. 2020 Feb 5; 40(6): 1232–1247. doi: 10.1523/JNEUROSCI.1675-19.2019

PMCID:: PMC7002140

Abstract Article PDF–12M

Select item 586081311.

Spine Patterning Is Guided by Segmentation of the Notochord Sheath

Susan Wopat, Jennifer Bagwell, Kaelyn D. Sumigray, Amy L. Dickson, Leonie F.A. Huitema, Kenneth D. Poss, Stefan Schulte-Merker, Michel Bagnat

Cell Rep. Author manuscript; available in PMC 2018 Mar 20.

Published in final edited form as: Cell Rep. 2018 Feb 20; 22(8): 2026–2038. doi: 10.1016/j.celrep.2018.01.084

PMCID:: PMC5860813

Abstract Article PDF–2.9M

Select item 565052812.

Bmp Signaling Governs Biliary-Driven Liver Regeneration in Zebrafish via Tbx2b and Id2a

Tae-Young Choi, Mehwish Khaliq, Shinya Tsurusaki, Nikolay Ninov, Didier Y.R. Stainier, Minoru Tanaka, Donghun Shin

Hepatology. Author manuscript; available in PMC 2018 Nov 1.

Published in final edited form as: Hepatology. 2017 Nov; 66(5): 1616–1630. Published online 2017 Sep 29. doi: 10.1002/hep.29309

PMCID:: PMC5650528

Abstract Article PDF–2.4M

Select item 532175113.

Proteolysis regulates cardiomyocyte maturation and tissue integration

Ryuichi Fukuda, Felix Gunawan, Arica Beisaw, Vanesa Jimenez-Amilburu, Hans-Martin Maischein, Sawa Kostin, Koichi Kawakami, Didier Y. R. Stainier

Nat Commun. 2017; 8: 14495. Published online 2017 Feb 17. doi: 10.1038/ncomms14495

PMCID:: PMC5321751

Abstract Article PDF–3.1M

Select item 503537214.

Histological and Transcriptomic Changes in Male Zebrafish Testes Due to Early Life Exposure to Low Level 2,3,7,8-Tetrachlorodibenzo-p-Dioxin

Bridget B. Baker, Jeremiah S. Yee, Danielle N. Meyer, Doris Yang, Tracie R. Baker

Zebrafish. 2016 Oct 1; 13(5): 413–423. Published online 2016 Oct 1. doi: 10.1089/zeb.2016.1275

PMCID:: PMC5035372

Abstract Article PDF–643K

Select item 499800715.

Transforming Growth Factor β Drives Hemogenic Endothelium Programming and the Transition to Hematopoietic Stem Cells

Rui Monteiro, Philip Pinheiro, Nicola Joseph, Tessa Peterkin, Jana Koth, Emmanouela Repapi, Florian Bonkhofer, Arif Kirmizitas, Roger Patient

Dev Cell. 2016 Aug 22; 38(4): 358–370. doi: 10.1016/j.devcel.2016.06.024

PMCID:: PMC4998007

Abstract Article PDF–5.6M

Select item 487073216.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe

BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z

PMCID:: PMC4870732

Abstract Article PDF–1.8M

Select item 474151717.

Four and a Half LIM Domains 1b (Fhl1b) Is Essential for Regulating the Liver versus Pancreas Fate Decision and for β-Cell Regeneration

Jin Xu, Jiaxi Cui, Aranzazu Del Campo, Chong Hyun Shin

PLoS Genet. 2016 Feb; 12(2): e1005831. Published online 2016 Feb 4. doi: 10.1371/journal.pgen.1005831

PMCID:: PMC4741517

Abstract Article PDF–8.2M

Select item 466264818.

Id2a is required for hepatic outgrowth during liver development in zebrafish

Mehwish Khaliq, Tae-Young Choi, Juhoon So, Donghun Shin

Mech Dev. Author manuscript; available in PMC 2016 Nov 1.

Published in final edited form as: Mech Dev. 2015 Nov; 138 Pt 3: 399–414. Published online 2015 May 27. doi: 10.1016/j.mod.2015.05.001

PMCID:: PMC4662648

Abstract Article PDF–1.4M

Select item 463413719.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549