PMC Links for GEO Profiles (Select 44233313) - PMC

Select item 102125591.

Mutation of vsx genes in zebrafish highlights the robustness of the retinal specification network

Joaquín Letelier, Lorena Buono, María Almuedo-Castillo, Jingjing Zang, Constanza Mounieres, Sergio González-Díaz, Rocío Polvillo, Estefanía Sanabria-Reinoso, Jorge Corbacho, Ana Sousa-Ortega, Ruth Diez del Corral, Stephan CF Neuhauss, Juan R Martínez-Morales

eLife. 2023; 12: e85594. Published online 2023 May 25. doi: 10.7554/eLife.85594

PMCID:: PMC10212559

Abstract Article PDF–10M

Select item 96803432.

Involvement of a Basic Helix-Loop-Helix Gene BHLHE40 in Specification of Chicken Retinal Pigment Epithelium

Toshiki Kinuhata, Keita Sato, Tetsuya Bando, Taro Mito, Satoru Miyaishi, Tsutomu Nohno, Hideyo Ohuchi

J Dev Biol. 2022 Dec; 10(4): 45. Published online 2022 Oct 29. doi: 10.3390/jdb10040045

PMCID:: PMC9680343

Abstract Article PDF–1.6M

Select item 85305113.

Stretching of the retinal pigment epithelium contributes to zebrafish optic cup morphogenesis

Tania Moreno-Mármol, Mario Ledesma-Terrón, Noemi Tabanera, Maria Jesús Martin-Bermejo, Marcos J Cardozo, Florencia Cavodeassi, Paola Bovolenta

eLife. 2021; 10: e63396. Published online 2021 Sep 21. doi: 10.7554/eLife.63396

PMCID:: PMC8530511

Abstract Article PDF–28M

Select item 81161094.

Retinal Pigment Epithelium and Neural Retinal Progenitors Interact via Semaphorin 6D to Facilitate Optic Cup Morphogenesis

Paula Bernice Cechmanek, Carrie Lynn Hehr, Sarah McFarlane

eNeuro. 2021 May-Jun; 8(3): ENEURO.0053-21.2021. Prepublished online 2021 Apr 2. Published online 2021 May 6. doi: 10.1523/ENEURO.0053-21.2021

PMCID:: PMC8116109

Abstract Article PDF–6.1M

Select item 62069855.

Long non-coding RNAs have age-dependent diurnal expression that coincides with age-related changes in genome-wide facultative heterochromatin

Jinhee Park, William J. Belden

BMC Genomics. 2018; 19: 777. Published online 2018 Oct 29. doi: 10.1186/s12864-018-5170-3

PMCID:: PMC6206985

Abstract Article PDF–1.5M

Select item 59619326.

Distinct Molecular Signature of Murine Fetal Liver and Adult Hematopoietic Stem Cells Identify Novel Regulators of Hematopoietic Stem Cell Function

Javed K. Manesia, Monica Franch, Daniel Tabas-Madrid, Ruben Nogales-Cadenas, Thomas Vanwelden, Elisa Van Den Bosch, Zhuofei Xu, Alberto Pascual-Montano, Satish Khurana, Catherine M. Verfaillie

Stem Cells Dev. Author manuscript; available in PMC 2018 May 21.

Published in final edited form as: Stem Cells Dev. 2017 Apr 15; 26(8): 573–584. Published online 2017 Feb 13. doi: 10.1089/scd.2016.0294

PMCID:: PMC5961932

Abstract Article PDF–1.7M

Select item 51477667.

Genetically Blocking the Zebrafish Pineal Clock Affects Circadian Behavior

Zohar Ben-Moshe Livne, Shahar Alon, Daniela Vallone, Yared Bayleyen, Adi Tovin, Inbal Shainer, Laura G. Nisembaum, Idit Aviram, Sima Smadja-Storz, Michael Fuentes, Jack Falcón, Eli Eisenberg, David C. Klein, Harold A. Burgess, Nicholas S. Foulkes, Yoav Gothilf

PLoS Genet. 2016 Nov; 12(11): e1006445. Published online 2016 Nov 21. doi: 10.1371/journal.pgen.1006445

PMCID:: PMC5147766

Abstract Article PDF–2.1M

Select item 48172298.

The spotted gar genome illuminates vertebrate evolution and facilitates human-to-teleost comparisons

Ingo Braasch, Andrew R. Gehrke, Jeramiah J. Smith, Kazuhiko Kawasaki, Tereza Manousaki, Jeremy Pasquier, Angel Amores, Thomas Desvignes, Peter Batzel, Julian Catchen, Aaron M. Berlin, Michael S. Campbell, Daniel Barrell, Kyle J. Martin, John F. Mulley, Vydianathan Ravi, Alison P. Lee, Tetsuya Nakamura, Domitille Chalopin, Shaohua Fan, Dustin Wcisel, Cristian Cañestro, Jason Sydes, Felix E. G. Beaudry, Yi Sun, Jana Hertel, Michael J. Beam, Mario Fasold, Mikio Ishiyama, Jeremy Johnson, Steffi Kehr, Marcia Lara, John H. Letaw, Gary W. Litman, Ronda T. Litman, Masato Mikami, Tatsuya Ota, Nil Ratan Saha, Louise Williams, Peter F. Stadler, Han Wang, John S. Taylor, Quenton Fontenot, Allyse Ferrara, Stephen M. J. Searle, Bronwen Aken, Mark Yandell, Igor Schneider, Jeffrey A. Yoder, Jean-Nicolas Volff, Axel Meyer, Chris T. Amemiya, Byrappa Venkatesh, Peter W. H. Holland, Yann Guiguen, Julien Bobe, Neil H. Shubin, Federica Di Palma, Jessica Alföldi, Kerstin Lindblad-Toh, John H. Postlethwait

Nat Genet. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Genet. 2016 Apr; 48(4): 427–437. Published online 2016 Mar 7. doi: 10.1038/ng.3526

PMCID:: PMC4817229

Abstract Article PDF–2.6M

Select item 47619279.

Progestins alter photo-transduction cascade and circadian rhythm network in eyes of zebrafish (Danio rerio)

Yanbin Zhao, Karl Fent

Sci Rep. 2016; 6: 21559. Published online 2016 Feb 22. doi: 10.1038/srep21559

PMCID:: PMC4761927

Abstract Article PDF–1.8M

Select item 463413710.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 441830511.

Comprehensive Expression Map of Transcription Regulators in the Adult Zebrafish Telencephalon Reveals Distinct Neurogenic Niches

Nicolas Diotel, Rebecca Rodriguez Viales, Olivier Armant, Martin März, Marco Ferg, Sepand Rastegar, Uwe Strähle

J Comp Neurol. 2015 Jun 1; 523(8): 1202–1221. Published online 2015 Feb 19. doi: 10.1002/cne.23733

PMCID:: PMC4418305

Abstract Article PDF–1.5M

Select item 436018412.

Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9

Justin Liu, Florian T. Merkle, Avni V. Gandhi, James A. Gagnon, Ian G. Woods, Cindy N. Chiu, Tomomi Shimogori, Alexander F. Schier, David A. Prober

Development. 2015 Mar 15; 142(6): 1113–1124. doi: 10.1242/dev.117424

PMCID:: PMC4360184

Abstract Article

Select item 397328913.

The light-induced transcriptome of the zebrafish pineal gland reveals complex regulation of the circadian clockwork by light

Zohar Ben-Moshe, Shahar Alon, Philipp Mracek, Lior Faigenbloom, Adi Tovin, Gad D. Vatine, Eli Eisenberg, Nicholas S. Foulkes, Yoav Gothilf

Nucleic Acids Res. 2014 Apr; 42(6): 3750–3767. Published online 2014 Jan 13. doi: 10.1093/nar/gkt1359

PMCID:: PMC3973289

Abstract Article PDF–12M

Select item 358540214.

Analysis of a Gene Regulatory Cascade Mediating Circadian Rhythm in Zebrafish

Ying Li, Guang Li, Haifang Wang, Jiulin Du, Jun Yan

PLoS Comput Biol. 2013 Feb; 9(2): e1002940. Published online 2013 Feb 28. doi: 10.1371/journal.pcbi.1002940

PMCID:: PMC3585402

Abstract Article PDF–1.4M

Select item 352729315.

Systematic Identification of Rhythmic Genes Reveals camk1gb as a New Element in the Circadian Clockwork

Adi Tovin, Shahar Alon, Zohar Ben-Moshe, Philipp Mracek, Gad Vatine, Nicholas S. Foulkes, Jasmine Jacob-Hirsch, Gideon Rechavi, Reiko Toyama, Steven L. Coon, David C. Klein, Eli Eisenberg, Yoav Gothilf

PLoS Genet. 2012 Dec; 8(12): e1003116. Published online 2012 Dec 20. doi: 10.1371/journal.pgen.1003116

PMCID:: PMC3527293

Abstract Article PDF–1.0M

Select item 339659616.

Comparative and Evolutionary Analysis of the HES/HEY Gene Family Reveal Exon/Intron Loss and Teleost Specific Duplication Events

Mi Zhou, Jun Yan, Zhaowu Ma, Yang Zhou, Nibras Najm Abbood, Jianfeng Liu, Li Su, Haibo Jia, An-Yuan Guo

PLoS One. 2012; 7(7): e40649. Published online 2012 Jul 13. doi: 10.1371/journal.pone.0040649

PMCID:: PMC3396596

Abstract Article PDF–1.2M

Select item 321369817.

Microarray Screening for Genes Involved in Oligodendrocyte Differentiation in the Zebrafish CNS

Ah-Young Chung, Suhyun Kim, Ho Kim, Young-Ki Bae, Hae-Chul Park

Exp Neurobiol. 2011 Jun; 20(2): 85–91. Published online 2011 Jun 30. doi: 10.5607/en.2011.20.2.85

PMCID:: PMC3213698

Abstract Article PDF–940K

Select item 317805918.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 119954619.

The zebrafish gene map defines ancestral vertebrate chromosomes

Ian G. Woods, Catherine Wilson, Brian Friedlander, Patricia Chang, Daengnoy K. Reyes, Rebecca Nix, Peter D. Kelly, Felicia Chu, John H. Postlethwait, William S. Talbot

Genome Res. 2005 Sep; 15(9): 1307–1314. doi: 10.1101/gr.4134305

PMCID:: PMC1199546

Abstract Article PDF–595K

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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