PMC Links for GEO Profiles (Select 41268520) - PMC

Select item 110083681.

ALKBH5 suppresses autophagic flux via N6-methyladenosine demethylation of ZKSCAN3 mRNA in acute pancreatitis

Tao Zhang, Shuai Zhu, Geng-Wen Huang

World J Gastroenterol. 2024 Mar 28; 30(12): 1764–1776. Published online 2024 Mar 28. doi: 10.3748/wjg.v30.i12.1764

PMCID:: PMC11008368

Select item 101785442.

Effect of Lacking ZKSCAN3 on Autophagy, Lysosomal Biogenesis and Senescence

Xiao-Min Li, Jun-Hao Wen, Ze-Sen Feng, Yun-Shan Wu, Dong-Yi Li, Shan Liang, Dan Wu, Hong-Luan Wu, Shang-Mei Li, Zhen-Nan Ye, Chen Yang, Lin Sun, Ji-Xin Tang, Hua-Feng Liu

Int J Mol Sci. 2023 May; 24(9): 7786. Published online 2023 Apr 24. doi: 10.3390/ijms24097786

PMCID:: PMC10178544

Abstract Article PDF–6.7M

Select item 101612153.

Cardiomyocyte ZKSCAN3 regulates remodeling following pressure‐overload

Xiaosen Ouyang, Sayan Bakshi, Gloria A. Benavides, Zhihuan Sun, Gerardo Hernandez‐Moreno, Helen E. Collins, Mariame S. Kane, Silvio Litovsky, Martin E. Young, John C. Chatham, Victor Darley‐Usmar, Adam R. Wende, Jianhua Zhang

Physiol Rep. 2023 May; 11(9): e15686. Published online 2023 May 5. doi: 10.14814/phy2.15686

PMCID:: PMC10161215

Abstract Article PDF–3.9M

Select item 91173764.

Zkscan3 affects erythroblast development by regulating the transcriptional activity of GATA1 and KLF1 in mice

Zixuan Li, Binjie Sheng, Tingting Zhang, Tian Wang, Dan Chen, Gangli An, Xingbing Wang, Huimin Meng, Lin Yang

J Mol Histol. 2022; 53(2): 423–436. Published online 2021 Dec 23. doi: 10.1007/s10735-021-10052-8

PMCID:: PMC9117376

Abstract Article PDF–4.3M

Select item 88680125.

ZKSCAN3 in severe bacterial lung infection and sepsis-induced immunosuppression

Xiaosen Ouyang, Eugene Becker, Jr., Nathaniel B. Bone, Michelle S. Johnson, Jason Craver, Wei-Xing Zong, Victor M. Darley-Usmar, Jaroslaw W. Zmijewski, Jianhua Zhang

Lab Invest. Author manuscript; available in PMC 2022 Mar 9.

Published in final edited form as: Lab Invest. 2021 Nov; 101(11): 1467–1474. Published online 2021 Sep 9. doi: 10.1038/s41374-021-00660-z

PMCID:: PMC8868012

Abstract Article PDF–1.4M

Select item 87633176.

Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1–CoREST interactome during embryonic stem cell differentiation

Claire E. Barnes, David M. English, Megan Broderick, Mark O. Collins, Shaun M. Cowley

Mol Omics. 2022 Jan 17; 18(1): 31–44. Published online 2021 Oct 14. doi: 10.1039/d1mo00236h

PMCID:: PMC8763317

Abstract Article

Select item 55290797.

The role of ZKSCAN3 in the transcriptional regulation of autophagy

Haihui Pan, Ye Yan, Chengyu Liu, Toren Finkel

Autophagy. 2017; 13(7): 1235–1238. Published online 2017 Jun 5. doi: 10.1080/15548627.2017.1320635

PMCID:: PMC5529079

Article PDF–595K

Select item 36280918.

ZKSCAN3 (ZNF306) is a Master Transcriptional Repressor of Autophagy

Santosh Chauhan, Jinesh G Goodwin, Swati Chauhan, Ganiraju Manyam, Jing Wang, Ashish M. Kamat, Douglas D. Boyd

Mol Cell. Author manuscript; available in PMC 2014 Apr 11.

Published in final edited form as: Mol Cell. 2013 Apr 11; 50(1): 16–28. Published online 2013 Feb 21. doi: 10.1016/j.molcel.2013.01.024

PMCID:: PMC3628091

Abstract Article PDF–5.6M

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 311015110.

A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58

Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara

Dev Cell. Author manuscript; available in PMC 2011 Jun 7.

Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011

PMCID:: PMC3110151

Abstract Article PDF–2.0M

Select item 277551811.

A Genome-Wide Screen for Spatially Restricted Expression Patterns Identifies Transcription Factors That Regulate Glial Development

Hui Fu, Jun Cai, Hans Clevers, Eva Fast, Susan Gray, Rachel Greenberg, Mukesh K. Jain, Qiufu Ma, Mengsheng Qiu, David H. Rowitch, Christopher M. Taylor, Charles D. Stiles

J Neurosci. 2009 Sep 9; 29(36): 11399–11408. doi: 10.1523/JNEUROSCI.0160-09.2009

PMCID:: PMC2775518

Abstract Article PDF–2.5M

Select item 275486712.

Initiation of myoblast/brown fat switch through a PRDM16-C/EBP-ß transcriptional complex

Shingo Kajimura, Patrick Seale, Kazuishi Kubota, Elaine Lunsford, John V. Frangioni, Steven P. Gygi, Bruce M. Spiegelman

Nature. Author manuscript; available in PMC 2010 Feb 27.

Published in final edited form as: Nature. 2009 Aug 27; 460(7259): 1154–1158. Published online 2009 Jul 29. doi: 10.1038/nature08262

PMCID:: PMC2754867

Abstract Article PDF–2.3M

Select item 259638713.

Unbiased Screening for Transcriptional Targets of ZKSCAN3 Identifies Integrin β4 and Vascular Endothelial Growth Factor as Downstream Targets

Lin Yang, Li Zhang, Qiuyu Wu, Douglas D. Boyd

J Biol Chem. 2008 Dec 12; 283(50): 35295–35304. doi: 10.1074/jbc.M806965200

PMCID:: PMC2596387

Abstract Article PDF–801K

Select item 43978314.

Genomic Analysis of Mouse Retinal Development

Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho, Rachel Yung, Elizabeth Asch, Lucila Ohno-Machado, Wing H Wong, Constance L Cepko

PLoS Biol. 2004 Sep; 2(9): e247. Published online 2004 Jun 29. doi: 10.1371/journal.pbio.0020247

PMCID:: PMC439783

Abstract Article PDF–975K

Select item 31099215.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098016.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 28355417.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

Select item 13924118.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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