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Items: 1 to 20 of 79

1.
Uncovering a delicate balance between endonuclease RNase III and ribosomal protein S15 in E. coli ribosome assembly
Anusha Naganathan, Roxanne Keltz, Hiram Lyon, Gloria M. Culver
Biochimie. Author manuscript; available in PMC 2022 Dec 1.
Published in final edited form as: Biochimie. 2021 Dec; 191: 104–117. Published online 2021 Sep 8. doi: 10.1016/j.biochi.2021.09.003
PMCID:
PMC8627457
ArticlePDF–1.0M
2.
The molecular mechanism of dsRNA processing by a bacterial Dicer
Lan Jin, He Song, Joseph E Tropea, Danielle Needle, David S Waugh, Shuo Gu, Xinhua Ji
Nucleic Acids Res. 2019 May 21; 47(9): 4707–4720. Published online 2019 Mar 27. doi: 10.1093/nar/gkz208
PMCID:
PMC6511835
ArticlePDF–4.4M
3.
In vivo cleavage rules and target repertoire of RNase III in Escherichia coli
Yael Altuvia, Amir Bar, Niv Reiss, Ehud Karavani, Liron Argaman, Hanah Margalit
Nucleic Acids Res. 2018 Nov 2; 46(19): 10380–10394. Published online 2018 Aug 3. doi: 10.1093/nar/gky684
Correction in:
Nucleic Acids Res. 2018 Nov 2; 46(19): 10530–10531.
PMCID:
PMC6212723
ArticlePDF–3.4M
4.
Mechanism of Ribonuclease III Catalytic Regulation by Serine Phosphorylation
Swapna Gone, Mercedes Alfonso-Prieto, Samridhdi Paudyal, Allen W. Nicholson
Sci Rep. 2016; 6: 25448. Published online 2016 May 6. doi: 10.1038/srep25448
PMCID:
PMC4858673
ArticlePDF–1.0M
5.
RNase III-Independent Autogenous Regulation of Escherichia coli Polynucleotide Phosphorylase via Translational Repression
Thomas Carzaniga, Gianni Dehò, Federica Briani
J Bacteriol. 2015 Jun; 197(11): 1931–1938. Prepublished online 2015 Mar 30. Published online 2015 May 5. doi: 10.1128/JB.00105-15
PMCID:
PMC4420914
ArticlePDF–856K
6.
Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB
Samridhdi Paudyal, Mercedes Alfonso-Prieto, Vincenzo Carnevale, Shiv K Redhu, Michael L Klein, Allen W Nicholson
Proteins. 2015 Mar; 83(3): 459–472. Published online 2015 Jan 21. doi: 10.1002/prot.24751
PMCID:
PMC4329070
ArticlePDF–647K
7.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
ArticlePDF–1.1M
8.
RNase III is required for localization to the nucleoid of the 5′ pre-rRNA leader and for optimal induction of rRNA synthesis in E. coli
Francisco Malagon
RNA. 2013 Sep; 19(9): 1200–1207. doi: 10.1261/rna.038588.113
PMCID:
PMC3753927
ArticlePDF–577K
9.
Nus Transcription Elongation Factors and RNase III Modulate Small Ribosome Subunit Biogenesis in E. coli
Mikhail Bubunenko, Donald L. Court, Abdalla Al Refaii, Shivalika Saxena, Alexey Korepanov, David I. Friedman, Max E. Gottesman, Jean-Hervé Alix
Mol Microbiol. Author manuscript; available in PMC 2014 Jan 1.
Published in final edited form as: Mol Microbiol. 2013 Jan; 87(2): 382–393. Published online 2012 Dec 10. doi: 10.1111/mmi.12105
PMCID:
PMC3545037
ArticlePDF–966K
10.
RNase III Controls the Degradation of corA mRNA in Escherichia coli
Boram Lim, Se-Hoon Sim, Minji Sim, Kyungsub Kim, Che Ok Jeon, Younghoon Lee, Nam-Chul Ha, Kangseok Lee
J Bacteriol. 2012 May; 194(9): 2214–2220. doi: 10.1128/JB.00099-12
PMCID:
PMC3347049
ArticlePDF–833K
11.
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays
Mark B. Stead, Sarah Marshburn, Bijoy K. Mohanty, Joydeep Mitra, Lourdes Peňa Castillo, Debashish Ray, Harm van Bakel, Timothy R. Hughes, Sidney R. Kushner
Nucleic Acids Res. 2011 Apr; 39(8): 3188–3203. Published online 2010 Dec 11. doi: 10.1093/nar/gkq1242
PMCID:
PMC3082872
ArticlePDF–7.5M
12.
RNase III Participates in GadY-Dependent Cleavage of the gadX-gadW mRNA
Jason A. Opdyke, Elizabeth M. Fozo, Matthew R. Hemm, Gisela Storz
J Mol Biol. Author manuscript; available in PMC 2012 Feb 11.
Published in final edited form as: J Mol Biol. 2011 Feb 11; 406(1): 29–43. Published online 2010 Dec 13. doi: 10.1016/j.jmb.2010.12.009
PMCID:
PMC3030618
ArticlePDF–1.0M
13.
E. coli RNase III(E38A) generates discrete-sized products from long dsRNA
Jianping Xiao, Caitlin E. Feehery, George Tzertzinis, Claude V. Maina
RNA. 2009 May; 15(5): 984–991. doi: 10.1261/rna.1196509
PMCID:
PMC2673077
ArticlePDF–1.0M
14.
YmdB: a stress-responsive ribonuclease-binding regulator of E. coli RNase III activity
Kwang-sun Kim, Robert Manasherob, Stanley N. Cohen
Genes Dev. 2008 Dec 15; 22(24): 3497–3508. doi: 10.1101/gad.1729508
PMCID:
PMC2607070
ArticlePDF–731K
15.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
ArticlePDF–1.0M
16.
Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5′-leader
Armin Resch, Taras Afonyushkin, Tania B. Lombo, Kenneth J. McDowall, Udo Bläsi, Vladimir R. Kaberdin
RNA. 2008 Mar; 14(3): 454–459. doi: 10.1261/rna.603108
PMCID:
PMC2248258
ArticlePDF–468K
17.
Characterization of the role of ribonucleases in Salmonella small RNA decay
Sandra C. Viegas, Verena Pfeiffer, Alexandra Sittka, Inês J. Silva, Jörg Vogel, Cecília M. Arraiano
Nucleic Acids Res. 2007 Dec; 35(22): 7651–7664. Published online 2007 Nov 3. doi: 10.1093/nar/gkm916
PMCID:
PMC2190706
ArticlePDF–4.0M
18.
Essentiality of Ribosomal and Transcription Antitermination Proteins Analyzed by Systematic Gene Replacement in Escherichia coli
Mikhail Bubunenko, Teresa Baker, Donald L. Court
J Bacteriol. 2007 Apr; 189(7): 2844–2853. Published online 2007 Feb 2. doi: 10.1128/JB.01713-06
PMCID:
PMC1855809
ArticlePDF–198K
19.
Translational control and target recognition by Escherichia coli small RNAs in vivo
Johannes H. Urban, Jörg Vogel
Nucleic Acids Res. 2007 Feb; 35(3): 1018–1037. Published online 2007 Jan 30. doi: 10.1093/nar/gkl1040
PMCID:
PMC1807950
ArticlePDF–2.6M
20.
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050
PMCID:
PMC1681482
ArticlePDF–400K

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