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Select item 108029521.

Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly

Marcos Schaan Profes, Araven Tiroumalechetty, Neel Patel, Stephanie S. Lauar, Simone Sidoli, Peri T. Kurshan

PLoS Biol. 2024 Jan; 22(1): e3002466. Published online 2024 Jan 22. doi: 10.1371/journal.pbio.3002466

PMCID:: PMC10802952

Abstract Article PDF–2.7M

Select item 99506602.

Peroxiredoxin 2 is required for the redox mediated adaptation to exercise

Qin Xia, Jose C. Casas-Martinez, Eduardo Zarzuela, Javier Muñoz, Antonio Miranda-Vizuete, Katarzyna Goljanek-Whysall, Brian McDonagh

Redox Biol. 2023 Apr; 60: 102631. Published online 2023 Feb 9. doi: 10.1016/j.redox.2023.102631

PMCID:: PMC9950660

Abstract Article PDF–15M

Select item 94378483.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 84467934.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83311835.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 81104896.

Overlapping and non-overlapping roles of the class-I histone deacetylase-1 corepressors LET-418, SIN-3, and SPR-1 in Caenorhabditis elegans embryonic development

Yukihiro Kubota, Yuto Ohnishi, Tasuku Hamasaki, Gen Yasui, Natsumi Ota, Hiromu Kitagawa, Arashi Esaki, Muhamad Fahmi, Masahiro Ito

Genes Genomics. 2021; 43(5): 553–565. Published online 2021 Mar 19. doi: 10.1007/s13258-021-01076-1

PMCID:: PMC8110489

Abstract Article PDF–3.2M

Select item 79951767.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 78523108.

The extracellular matrix phenome across species

Cyril Statzer, Collin Y. Ewald

Matrix Biol Plus. 2020 Nov; 8: 100039. Published online 2020 Jun 23. doi: 10.1016/j.mbplus.2020.100039

PMCID:: PMC7852310

Abstract Article PDF–6.5M

Select item 65161829.

KIN‐4/MAST kinase promotes PTEN‐mediated longevity of Caenorhabditis elegans via binding through a PDZ domain

Seon Woo A. An, Eun‐Seok Choi, Wooseon Hwang, Heehwa G. Son, Jae‐Seong Yang, Keunhee Seo, Hyun‐Jun Nam, Nhung T. H. Nguyen, Eun Ji E. Kim, Bo Kyoung Suh, Youngran Kim, Shunji Nakano, Youngjae Ryu, Chang Man Ha, Ikue Mori, Sang Ki Park, Joo‐Yeon Yoo, Sanguk Kim, Seung‐Jae V. Lee

Aging Cell. 2019 Jun; 18(3): e12906. Published online 2019 Feb 17. doi: 10.1111/acel.12906

PMCID:: PMC6516182

Abstract Article PDF–930K

Select item 644267910.

Axon-Dependent Patterning and Maintenance of Somatosensory Dendritic Arbors

Nelson J. Ramirez-Suarez, Helen M. Belalcazar, Christopher J. Salazar, Burcu Beyaz, Benjamin Raja, Ken C.Q. Nguyen, Kevin Celestrin, Julius Fredens, Nils J. Færgeman, David H. Hall, Hannes E. Bülow

Dev Cell. Author manuscript; available in PMC 2020 Jan 28.

Published in final edited form as: Dev Cell. 2019 Jan 28; 48(2): 229–244.e4. Published online 2019 Jan 17. doi: 10.1016/j.devcel.2018.12.015

PMCID:: PMC6442679

Abstract Article PDF–1.6M

Select item 621659011.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 577312712.

6-OHDA-induced dopaminergic neurodegeneration in Caenorhabditis elegans is promoted by the engulfment pathway and inhibited by the transthyretin-related protein TTR-33

Sarah-Lena Offenburger, Xue Yan Ho, Theresa Tachie-Menson, Sean Coakley, Massimo A. Hilliard, Anton Gartner

PLoS Genet. 2018 Jan; 14(1): e1007125. Published online 2018 Jan 18. doi: 10.1371/journal.pgen.1007125

PMCID:: PMC5773127

Abstract Article PDF–4.5M

Select item 494261213.

The RNA-binding protein repertoire of Arabidopsis thaliana

Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring

Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766

PMCID:: PMC4942612

Abstract Article PDF–1.2M

Select item 478127414.

Basement membranes.

James M Kramer

WormBook. 2005 : 1–15. Published online 2005 Sep 1. doi: 10.1895/wormbook.1.16.1

PMCID:: PMC4781274

Abstract Article

Select item 365827715.

SH3 interactome conserves general function over specific form

Xiaofeng Xin, David Gfeller, Jackie Cheng, Raffi Tonikian, Lin Sun, Ailan Guo, Lianet Lopez, Alevtina Pavlenco, Adenrele Akintobi, Yingnan Zhang, Jean-François Rual, Bridget Currell, Somasekar Seshagiri, Tong Hao, Xinping Yang, Yun A Shen, Kourosh Salehi-Ashtiani, Jingjing Li, Aaron T Cheng, Dryden Bouamalay, Adrien Lugari, David E Hill, Mark L Grimes, David G Drubin, Barth D Grant, Marc Vidal, Charles Boone, Sachdev S Sidhu, Gary D Bader

Mol Syst Biol. 2013; 9: 652. Published online 2013 Apr 2. doi: 10.1038/msb.2013.9

PMCID:: PMC3658277

Abstract Article PDF–2.3M

Select item 337136116.

The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification

Chi Zhang, Taiowa A. Montgomery, Sylvia E. J. Fischer, Susana M. D. A. Garcia, Christian G. Riedel, Noah Fahlgren, Christopher M. Sullivan, James C. Carrington, Gary Ruvkun

Curr Biol. Author manuscript; available in PMC 2013 May 22.

Published in final edited form as: Curr Biol. 2012 May 22; 22(10): 881–890. Published online 2012 Apr 26. doi: 10.1016/j.cub.2012.04.011