PMC Links for GEO Profiles (Select 39731705) - PMC

Shuaikun Su, Yutong Xue, Alexei Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L Martindale, Wen Li, Wai Lim Ku, Keji Zhao, Supriyo De, Weiping Shen, Payel Sen, Myriam Gorospe, Dongyi Xu, Weidong Wang

Nucleic Acids Res. 2022 Jul 8; 50(12): 7013–7033. Published online 2022 Jun 24. doi: 10.1093/nar/gkac538

PMCID:: PMC9262614

Abstract Article PDF–3.6M

Select item 91197364.

OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization

Nathan H. Cho, Keith C. Cheveralls, Andreas-David Brunner, Kibeom Kim, André C. Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y. Li, Hera Canaj, James Y.S. Kim, Edna M. Stewart, Christian Gnann, Frank McCarthy, Joana P. Cabrera, Rachel M. Brunetti, Bryant B. Chhun, Greg Dingle, Marco Y. Hein, Bo Huang, Shalin B. Mehta, Jonathan S. Weissman, Rafael Gómez-Sjöberg, Daniel N. Itzhak, Loic A. Royer, Matthias Mann, Manuel D. Leonetti

Science. Author manuscript; available in PMC 2022 Sep 11.

Published in final edited form as: Science. 2022 Mar 11; 375(6585): eabi6983. Published online 2022 Mar 11. doi: 10.1126/science.abi6983

PMCID:: PMC9119736

Abstract Article PDF–3.3M

Select item 86881735.

A Multi-center Genome-wide Association Study of Cervical Dystonia

Yan V. Sun, Chengchen Li, Qin Hui, Yunfeng Huang, Richard Barbano, Ramon Rodriguez, Irene A. Malaty, Stephen Reich, Kimberly Bambarger, Katie Holmes, Joseph Jankovic, Neepa J. Patel, Emmanuel Roze, Marie Vidailhet, Brian D. Berman, Mark S. LeDoux, Alberto J. Espay, Pinky Agarwal, Sarah Pirio-Richardson, Samuel A. Frank, William G. Ondo, Rachel Saunders-Pullman, Sylvain Chouinard, Stover Natividad, Alfredo Berardelli, Alexander Y. Pantelyat, Allison Brashear, Susan H. Fox, Meike Kasten, Ulrike M. Krämer, Miriam Neis, Tobias Bäumer, Sebastian Loens, Max Borsche, Simone Zittel, Antonia Maurer, Mathias Gelderblom, Jens Volkmann, Thorsten Odorfer, Andrea A. Kühn, Friederike Borngräber, Inke R. König, Carlos Cruchaga, Adam C. Cotton, Gamze Kilic-Berkmen, Alan Freeman, Stewart A. Factor, Laura Scorr, J. Douglas Bremner, Viola Vaccarino, Arshed A. Quyyumi, Christine Klein, Joel S. Perlmutter, Katja Lohmann, H. A. Jinnah

Mov Disord. Author manuscript; available in PMC 2022 Dec 1.

Published in final edited form as: Mov Disord. 2021 Dec; 36(12): 2795–2801. Published online 2021 Jul 28. doi: 10.1002/mds.28732

PMCID:: PMC8688173

Abstract Article PDF–118K

Select item 84909976.

BioID reveals an ATG9A interaction with ATG13‐ATG101 in the degradation of p62/SQSTM1‐ubiquitin clusters

Ashari R Kannangara, Daniel M Poole, Colten M McEwan, Joshua C Youngs, Vajira K Weerasekara, Alex M Thornock, Misael T Lazaro, Eranga R Balasooriya, Laura M Oh, Erik J Soderblom, Jonathan J Lee, Daniel L Simmons, Joshua L Andersen

EMBO Rep. 2021 Oct 5; 22(10): e51136. Published online 2021 Aug 9. doi: 10.15252/embr.202051136

PMCID:: PMC8490997

Abstract Article PDF–4.5M

Select item 82666177.

Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins

Benjamin Lang, Jae-Seong Yang, Mireia Garriga-Canut, Silvia Speroni, Moritz Aschern, Maria Gili, Tobias Hoffmann, Gian Gaetano Tartaglia, Sebastian P Maurer

Nucleic Acids Res. 2021 Jul 9; 49(12): 6702–6721. Published online 2021 Jun 16. doi: 10.1093/nar/gkab490

PMCID:: PMC8266617

Abstract Article PDF–4.0M

Select item 81650308.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 78128769.

An Arf/Rab cascade controls the growth and invasiveness of glioblastoma

Gopinath Kulasekaran, Mathilde Chaineau, Valerio Emilio Crescenzo Piscopo, Federica Verginelli, Maryam Fotouhi, Martine Girard, Yeman Tang, Rola Dali, Rita Lo, Stefano Stifani, Peter S. McPherson

J Cell Biol. 2021 Feb 1; 220(2): e202004229. Published online 2021 Jan 14. doi: 10.1083/jcb.202004229

PMCID:: PMC7812876

Abstract Article PDF–6.2M

Select item 696404610.

Association analysis between the tag single nucleotide polymorphisms of DENND1A and the risk of polycystic ovary syndrome in Chinese Han women

Ya-nan Zhu, Yi-ting Zhang, Qin Liu, Shan-mei Shen, Xiang Zou, Yun-xia Cao, Wen-jun Wang, Long Yi, Qian Gao, Wei-dong Yang, Yong Wang

BMC Med Genet. 2020; 21: 14. Published online 2020 Jan 15. doi: 10.1186/s12881-019-0945-1

PMCID:: PMC6964046

Abstract Article PDF–1.2M

Select item 674682211.

The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei

Giovanni Nassa, Giorgio Giurato, Annamaria Salvati, Valerio Gigantino, Giovanni Pecoraro, Jessica Lamberti, Francesca Rizzo, Tuula A. Nyman, Roberta Tarallo, Alessandro Weisz

Sci Data. 2019; 6: 173. Published online 2019 Sep 16. doi: 10.1038/s41597-019-0179-2

PMCID:: PMC6746822

Abstract Article PDF–2.0M

Select item 667499712.

Connecdenn, A Novel DENN Domain-Containing Protein of Neuronal Clathrin-Coated Vesicles Functioning in Synaptic Vesicle Endocytosis

Patrick D. Allaire, Brigitte Ritter, Sebastien Thomas, Jonathon L. Burman, Alexei Yu. Denisov, Valerie Legendre-Guillemin, Scott Q. Harper, Beverly L. Davidson, Kalle Gehring, Peter S. McPherson

J Neurosci. 2006 Dec 20; 26(51): 13202–13212. doi: 10.1523/JNEUROSCI.4608-06.2006

PMCID:: PMC6674997

Abstract Article PDF–616K

Select item 665642113.

miRNA Profiling Reveals miRNA-130b-3p Mediates DENND1A Variant 2 Expression and Androgen Biosynthesis

Jan M McAllister, Angela X Han, Bhavi P Modi, Maria E Teves, Grace R Mavodza, Zachary L Anderson, Tsaiwei Shen, Lane K Christenson, Kellie J Archer, Jerome F Strauss, III

Endocrinology. 2019 Aug; 160(8): 1964–1981. Published online 2019 Jun 11. doi: 10.1210/en.2019-00013

PMCID:: PMC6656421

Abstract Article

Select item 642409814.

PRISMA: Protein Interaction Screen on Peptide Matrix Reveals Interaction Footprints and Modifications- Dependent Interactome of Intrinsically Disordered C/EBPβ

Gunnar Dittmar, Daniel Perez Hernandez, Elisabeth Kowenz-Leutz, Marieluise Kirchner, Günther Kahlert, Radoslaw Wesolowski, Katharina Baum, Maria Knoblich, Maria Hofstätter, Arnaud Muller, Jana Wolf, Ulf Reimer, Achim Leutz

iScience. 2019 Mar 29; 13: 351–370. Published online 2019 Mar 1. doi: 10.1016/j.isci.2019.02.026

PMCID:: PMC6424098

Abstract Article PDF–11M

Select item 549522515.

Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing

Teng Fei, Yiwen Chen, Tengfei Xiao, Wei Li, Laura Cato, Peng Zhang, Maura B. Cotter, Michaela Bowden, Rosina T. Lis, Shuang G. Zhao, Qiu Wu, Felix Y. Feng, Massimo Loda, Housheng Hansen He, X. Shirley Liu, Myles Brown

Proc Natl Acad Sci U S A. 2017 Jun 27; 114(26): E5207–E5215. Published online 2017 Jun 13. doi: 10.1073/pnas.1617467114

PMCID:: PMC5495225

Abstract Article PDF–1.3M

Select item 509646716.

Association of DENND1A Gene Polymorphisms with Polycystic Ovary Syndrome: A Meta-Analysis

Shan Bao, Jun-Hong Cai, Shu-Ying Yang, Yongchao Ren, Tian Feng, Tianbo Jin, Zhuo-Ri Li

J Clin Res Pediatr Endocrinol. 2016 Jun; 8(2): 135–143. Published online 2016 Jun 6. doi: 10.4274/jcrpe.2259

PMCID:: PMC5096467

Abstract Article PDF–577K

Select item 498347317.

Alternative splicing of DENND1A, a PCOS candidate gene, generates variant 2

Meng Kian Tee, Mart Speek, Balázs Legeza, Bhavi Modi, Maria Eugenia Teves, Janette M. McAllister, Jerome F. Strauss, III, Walter L. Miller

Mol Cell Endocrinol. Author manuscript; available in PMC 2017 Oct 15.

Published in final edited form as: Mol Cell Endocrinol. 2016 Oct 15; 434: 25–35. Published online 2016 Jun 11. doi: 10.1016/j.mce.2016.06.011

PMCID:: PMC4983473

Abstract Article PDF–1.4M

Select item 486917018.

An organelle-specific protein landscape identifies novel diseases and molecular mechanisms

Karsten Boldt, Jeroen van Reeuwijk, Qianhao Lu, Konstantinos Koutroumpas, Thanh-Minh T. Nguyen, Yves Texier, Sylvia E. C. van Beersum, Nicola Horn, Jason R. Willer, Dorus A. Mans, Gerard Dougherty, Ideke J. C. Lamers, Karlien L. M. Coene, Heleen H. Arts, Matthew J. Betts, Tina Beyer, Emine Bolat, Christian Johannes Gloeckner, Khatera Haidari, Lisette Hetterschijt, Daniela Iaconis, Dagan Jenkins, Franziska Klose, Barbara Knapp, Brooke Latour, Stef J. F. Letteboer, Carlo L. Marcelis, Dragana Mitic, Manuela Morleo, Machteld M. Oud, Moniek Riemersma, Susan Rix, Paulien A. Terhal, Grischa Toedt, Teunis J. P. van Dam, Erik de Vrieze, Yasmin Wissinger, Ka Man Wu, Gordana Apic, Philip L. Beales, Oliver E. Blacque, Toby J. Gibson, Martijn A. Huynen, Nicholas Katsanis, Hannie Kremer, Heymut Omran, Erwin van Wijk, Uwe Wolfrum, François Kepes, Erica E. Davis, Brunella Franco, Rachel H. Giles, Marius Ueffing, Robert B. Russell, Ronald Roepman, UK10K Rare Diseases Group

Nat Commun. 2016; 7: 11491. Published online 2016 May 13. doi: 10.1038/ncomms11491

PMCID:: PMC4869170

Abstract Article PDF–2.0M

Select item 476457319.

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning

Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich

eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466

PMCID:: PMC4764573

Abstract Article PDF–5.7M

Select item 450504620.

Phosphorylation-dependent Regulation of Connecdenn/DENND1 Guanine Nucleotide Exchange Factors

Gopinath Kulasekaran, Nadya Nossova, Andrea L. Marat, Ingrid Lund, Christopher Cremer, Maria S. Ioannou, Peter S. McPherson

J Biol Chem. 2015 Jul 17; 290(29): 17999–18008. Published online 2015 Jun 8. doi: 10.1074/jbc.M115.636712

PMCID:: PMC4505046

Abstract Article PDF–1.0M

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