PMC Links for GEO Profiles (Select 39712767) - PMC

Select item 100339371.

Assessment of community efforts to advance network-based prediction of protein–protein interactions

Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu

Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7

PMCID:: PMC10033937

Abstract Article PDF–1.5M

Select item 71699832.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 65779043.

The Brn-3 family of POU-domain factors: primary structure, binding specificity, and expression in subsets of retinal ganglion cells and somatosensory neurons

M Xiang, L Zhou, JP Macke, T Yoshioka, SH Hendry, RL Eddy, TB Shows, J Nathans

J Neurosci. 1995 Jul 1; 15(7): 4762–4785. doi: 10.1523/JNEUROSCI.15-07-04762.1995

PMCID:: PMC6577904

Abstract PDF–21M

Select item 48230694.

An epigenetic biomarker combination of PCDH17 and POU4F2 detects bladder cancer accurately by methylation analyses of urine sediment DNA in Han Chinese

Yongqiang Wang, Yuan Yu, Rui Ye, Duo Zhang, Qiaoling Li, Dan An, Lu Fang, Youcheng Lin, Yong Hou, Abai Xu, Yu Fu, Wei Lu, Xin Chen, Mingwei Chen, Meng Zhang, Huiling Jiang, Chuanxia Zhang, Pei Dong, Chong Li, Jun Chen, Guosheng Yang, Chunxiao Liu, Zhiming Cai, Fangjian Zhou, Song Wu

Oncotarget. 2016 Jan 19; 7(3): 2754–2764. Published online 2015 Dec 19. doi: 10.18632/oncotarget.6666

PMCID:: PMC4823069

Abstract Article PDF–2.6M

Select item 36924095.

RIT2, a neuron-specific small guanosine triphosphatase, is expressed in retinal neuronal cells and its promoter is modulated by the POU4 transcription factors

Ling Zhang, Karl Wahlin, Yuanyuan Li, Tomohiro Masuda, Zhiyong Yang, Donald J. Zack, Noriko Esumi

Mol Vis. 2013; 19: 1371–1386. Published online 2013 Jun 17.

PMCID:: PMC3692409

Abstract Article PDF–5.8M

Select item 34635826.

Diagnosis of Bladder Cancer Recurrence Based on Urinary Levels of EOMES, HOXA9, POU4F2, TWIST1, VIM, and ZNF154 Hypermethylation

Thomas Reinert, Michael Borre, Anders Christiansen, Gregers G. Hermann, Torben F. Ørntoft, Lars Dyrskjøt

PLoS One. 2012; 7(10): e46297. Published online 2012 Oct 3. doi: 10.1371/journal.pone.0046297

PMCID:: PMC3463582

Abstract Article PDF–403K

Select item 31780597.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 31188208.

Hsp-27 induction requires POU4F2/Brn-3b TF in doxorubicin-treated breast cancer cells, whereas phosphorylation alters its cellular localisation following drug treatment

Rieko Fujita, Samir Ounzain, Alice Chun Yin Wang, Richard John Heads, Vishwanie Shanie Budhram-Mahadeo

Cell Stress Chaperones. 2011 Jul; 16(4): 427–439. Published online 2011 Jan 29. doi: 10.1007/s12192-011-0256-8

PMCID:: PMC3118820

Abstract Article PDF–778K

Select item 31095719.

Proliferation-associated POU4F2/Brn-3b transcription factor expression is regulated by oestrogen through ERα and growth factors via MAPK pathway

Samir Ounzain, Samantha Bowen, Chandrakant Patel, Rieko Fujita, Richard J Heads, Vishwanie S Budhram-Mahadeo

Breast Cancer Res. 2011; 13(1): R5. Published online 2011 Jan 17. doi: 10.1186/bcr2809

PMCID:: PMC3109571

Abstract Article PDF–1.6M

Select item 277667910.

Egr-1 and Hipk2 are required for the TrkA to p75^NTR switch that occurs downstream of IGF1-R

Hui Li, Claudio Costantini, Heidi Scrable, Richard Weindruch, Luigi Puglielli

Neurobiol Aging. Author manuscript; available in PMC 2010 Dec 1.

Published in final edited form as: Neurobiol Aging. 2009 Dec; 30(12): 2010–2020. Published online 2008 Apr 2. doi: 10.1016/j.neurobiolaging.2008.02.015

PMCID:: PMC2776679

Abstract Article PDF–1.4M

Select item 264481911.

Genome-Wide Analysis of Histidine Repeats Reveals Their Role in the Localization of Human Proteins to the Nuclear Speckles Compartment

Eulàlia Salichs, Alice Ledda, Loris Mularoni, M. Mar Albà, Susana de la Luna

PLoS Genet. 2009 Mar; 5(3): e1000397. Published online 2009 Mar 6. doi: 10.1371/journal.pgen.1000397

PMCID:: PMC2644819

Abstract Article PDF–3.8M

Select item 245933312.

A Comprehensive Negative Regulatory Program Controlled by Brn3b to Ensure Ganglion Cell Specification from Multipotential Retinal Precursors

Feng Qiu, Haisong Jiang, Mengqing Xiang

J Neurosci. 2008 Mar 26; 28(13): 3392–3403. doi: 10.1523/JNEUROSCI.0043-08.2008

PMCID:: PMC2459333

Abstract Article PDF–722K

Select item 175155013.

Brn-3b enhances the pro-apoptotic effects of p53 but not its induction of cell cycle arrest by cooperating in trans-activation of bax expression

Vishwanie S. Budhram-Mahadeo, Samantha Bowen, Sonia Lee, Christina Perez-Sanchez, Elizabeth Ensor, Peter J. Morris, David S. Latchman

Nucleic Acids Res. 2006 Dec; 34(22): 6640–6652. Published online 2006 Dec 1. doi: 10.1093/nar/gkl878

PMCID:: PMC1751550

Abstract Article PDF–1.3M

Select item 135612914.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406