PMC Links for GEO Profiles (Select 39712271) - PMC

Select item 81650301.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 71699832.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 68779533.

Association of Melatonin Pathway Gene's Single-Nucleotide Polymorphisms with Systemic Lupus Erythematosus in a Chinese Population

Peng Wang, Lei Liu, Li-Fang Zhao, Chan-Na Zhao, Yan-Mei Mao, Yi-Lin Dan, Qian Wu, Xiao-Mei Li, De-Guang Wang, Hai-Feng Pan

J Immunol Res. 2019; 2019: 2397698. Published online 2019 Nov 13. doi: 10.1155/2019/2397698

PMCID:: PMC6877953

Abstract Article PDF–314K

Select item 59079284.

Inherited variation in circadian rhythm genes and risks of prostate cancer and three other cancer sites in combined cancer consortia

Fangyi Gu, Han Zhang, Paula L. Hyland, Sonja Berndt, Susan M. Gapstur, William Wheeler, the ELLIPSE consortium, Christopher I. Amos, Stephane Bezieau, Heike Bickeböller, Hermann Brenner, Paul Brennan, Jenny Chang-Claude, David V Conti, Jennifer Ann Doherty, Stephen B Gruber, Tabitha A Harrison, Richard B Hayes, Michael Hoffmeister, Richard S Houlston, Rayjean J. Hung, Mark A. Jenkins, Peter Kraft, Kate Lawrenson, James McKay, Sarah Markt, Lorelei Mucci, Catherine M. Phelan, Conghui Qu, Angela Risch, Mary Anne Rossing, H.-Erich Wichmann, Jianxin Shi, Eva Schernhammer, Kai Yu, Maria Teresa Landi, Neil E. Caporaso

Int J Cancer. Author manuscript; available in PMC 2018 Nov 1.

Published in final edited form as: Int J Cancer. 2017 Nov 1; 141(9): 1794–1802. Published online 2017 Jul 29. doi: 10.1002/ijc.30883

PMCID:: PMC5907928

Abstract Article PDF–372K

Select item 55572925.

Synergistic drug combinations for cancer identified in a CRISPR screen for pairwise genetic interactions

Kyuho Han, Edwin E. Jeng, Gaelen T. Hess, David W. Morgens, Amy Li, Michael C. Bassik

Nat Biotechnol. Author manuscript; available in PMC 2017 Sep 20.

Published in final edited form as: Nat Biotechnol. 2017 May; 35(5): 463–474. Published online 2017 Mar 20. doi: 10.1038/nbt.3834

PMCID:: PMC5557292

Abstract Article PDF–3.4M

Select item 54123316.

TRPV4 Stimulation Induced Melatonin Secretion by Increasing Arylalkymine N-acetyltransferase (AANAT) Protein Level

Hanan Awad Alkozi, Maria J. Perez de Lara, Juan Sánchez-Naves, Jesús Pintor

Int J Mol Sci. 2017 Apr; 18(4): 746. Published online 2017 Apr 1. doi: 10.3390/ijms18040746

PMCID:: PMC5412331

Abstract Article PDF–4.7M

Select item 50161207.

Degradation of Serotonin N-Acetyltransferase, a Circadian Regulator, by the N-end Rule Pathway

Brandon Wadas, Jimo Borjigin, Zheping Huang, Jang-Hyun Oh, Cheol-Sang Hwang, Alexander Varshavsky

J Biol Chem. 2016 Aug 12; 291(33): 17178–17196. Published online 2016 Jun 23. doi: 10.1074/jbc.M116.734640

PMCID:: PMC5016120

Abstract Article PDF–3.0M

Select item 46479418.

hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes

Philippe Lamesch, Ning Li, Stuart Milstein, Changyu Fan, Tong Hao, Gabor Szabo, Zhenjun Hu, Kavitha Venkatesan, Graeme Bethel, Paul Martin, Jane Rogers, Stephanie Lawlor, Stuart McLaren, Amélie Dricot, Heather Borick, Michael E. Cusick, Jean Vandenhaute, Ian Dunham, David E. Hill, Marc Vidal

Genomics. 2007 Mar; 89(3): 307–315. doi: 10.1016/j.ygeno.2006.11.012

PMCID:: PMC4647941

Abstract Article

Select item 44412159.

Widespread Macromolecular Interaction Perturbations in Human Genetic Disorders

Nidhi Sahni, Song Yi, Mikko Taipale, Juan I. Fuxman Bass, Jasmin Coulombe-Huntington, Fan Yang, Jian Peng, Jochen Weile, Georgios I. Karras, Yang Wang, István A. Kovács, Atanas Kamburov, Irina Krykbaeva, Mandy H. Lam, George Tucker, Vikram Khurana, Amitabh Sharma, Yang-Yu Liu, Nozomu Yachie, Quan Zhong, Yun Shen, Alexandre Palagi, Adriana San-Miguel, Changyu Fan, Dawit Balcha, Amelie Dricot, Daniel M. Jordan, Jennifer M. Walsh, Akash A. Shah, Xinping Yang, Ani Stoyanova, Alex Leighton, Michael A. Calderwood, Yves Jacob, Michael E. Cusick, Kourosh Salehi-Ashtiani, Luke J. Whitesell, Shamil Sunyaev, Bonnie Berger, Albert-László Barabási, Benoit Charloteaux, David E. Hill, Tong Hao, Frederick P. Roth, Yu Xia, Albertha J.M. Walhout, Susan Lindquist, Marc Vidal

Cell. Author manuscript; available in PMC 2016 Apr 23.

Published in final edited form as: Cell. 2015 Apr 23; 161(3): 647–660. doi: 10.1016/j.cell.2015.04.013

PMCID:: PMC4441215

Abstract Article PDF–1.2M

Select item 426658810.

A proteome-scale map of the human interactome network

Thomas Rolland, Murat Taşan, Benoit Charloteaux, Samuel J. Pevzner, Quan Zhong, Nidhi Sahni, Song Yi, Irma Lemmens, Celia Fontanillo, Roberto Mosca, Atanas Kamburov, Susan D. Ghiassian, Xinping Yang, Lila Ghamsari, Dawit Balcha, Bridget E. Begg, Pascal Braun, Marc Brehme, Martin P. Broly, Anne-Ruxandra Carvunis, Dan Convery-Zupan, Roser Corominas, Jasmin Coulombe-Huntington, Elizabeth Dann, Matija Dreze, Amélie Dricot, Changyu Fan, Eric Franzosa, Fana Gebreab, Bryan J. Gutierrez, Madeleine F. Hardy, Mike Jin, Shuli Kang, Ruth Kiros, Guan Ning Lin, Katja Luck, Andrew MacWilliams, Jörg Menche, Ryan R. Murray, Alexandre Palagi, Matthew M. Poulin, Xavier Rambout, John Rasla, Patrick Reichert, Viviana Romero, Elien Ruyssinck, Julie M. Sahalie, Annemarie Scholz, Akash A. Shah, Amitabh Sharma, Yun Shen, Kerstin Spirohn, Stanley Tam, Alexander O. Tejeda, Shelly A. Wanamaker, Jean-Claude Twizere, Kerwin Vega, Jennifer Walsh, Michael E. Cusick, Yu Xia, Albert-László Barabási, Lilia M. Iakoucheva, Patrick Aloy, Javier De Las Rivas, Jan Tavernier, Michael A. Calderwood, David E. Hill, Tong Hao, Frederick P. Roth, Marc Vidal

Cell. Author manuscript; available in PMC 2015 Nov 20.

Published in final edited form as: Cell. 2014 Nov 20; 159(5): 1212–1226. doi: 10.1016/j.cell.2014.10.050

PMCID:: PMC4266588

Abstract Article PDF–3.1M

Select item 340189911.

Association study of 21 circadian genes with bipolar I disorder, schizoaffective disorder, and schizophrenia

Hader A Mansour, Michael E Talkowski, Joel Wood, Kodavali V Chowdari, Lora McClain, Konasale Prasad, Debra Montrose, Andrea Fagiolini, Edward S Friedman, Michael H Allen, Charles L Bowden, Joseph Calabrese, Rif S El-Mallakh, Michael Escamilla, Stephen V Faraone, Mark D Fossey, Laszlo Gyulai, Jennifer M Loftis, Peter Hauser, Terence A Ketter, Lauren B Marangell, David J Miklowitz, Andrew A Nierenberg, Jayendra Patel, Gary S Sachs, Pamela Sklar, Jordan W Smoller, Nan Laird, Matcheri Keshavan, Michael E Thase, David Axelson, Boris Birmaher, David Lewis, Tim Monk, Ellen Frank, David J Kupfer, Bernie Devlin, Vishwajit L Nimgaonkar

Bipolar Disord. Author manuscript; available in PMC 2012 Jul 23.

Published in final edited form as: Bipolar Disord. 2009 Nov; 11(7): 701–710. doi: 10.1111/j.1399-5618.2009.00756.x

PMCID:: PMC3401899

Abstract Article PDF–305K

Select item 319155712.

Melatonin exerts by an autocrine loop antiproliferative effects in cholangiocarcinoma; its synthesis is reduced favoring cholangiocarcinoma growth

Yuyan Han, Sharon DeMorrow, Pietro Invernizzi, Qing Jing, Shannon Glaser, Anastasia Renzi, Fanyin Meng, Julie Venter, Francesca Bernuzzi, Mellanie White, Heather Francis, Ana Lleo, Marco Marzioni, Paolo Onori, Domenico Alvaro, Guido Torzilli, Eugenio Gaudio, Gianfranco Alpini

Am J Physiol Gastrointest Liver Physiol. 2011 Oct; 301(4): G623–G633. Published online 2011 Jul 21. doi: 10.1152/ajpgi.00118.2011

PMCID:: PMC3191557

Abstract Article

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302062914.

Mutation screening of melatonin-related genes in patients with autism spectrum disorders

Lina Jonsson, Elin Ljunggren, Anna Bremer, Christin Pedersen, Mikael Landén, Kent Thuresson, MaiBritt Giacobini, Jonas Melke

BMC Med Genomics. 2010; 3: 10. Published online 2010 Apr 8. doi: 10.1186/1755-8794-3-10

PMCID:: PMC3020629

Abstract Article PDF–1.1M

Select item 275386315.

Examination of Association of Genes in the Serotonin System to Autism

B.M. Anderson, N.C. Schnetz-Boutaud, J. Bartlett, A.M. Wotawa, H.H. Wright, R.K. Abramson, M.L. Cuccaro, J.R. Gilbert, M.A. Pericak-Vance, J.L. Haines

Neurogenetics. Author manuscript; available in PMC 2010 Jul 1.

Published in final edited form as: Neurogenetics. 2009 Jul; 10(3): 209–216. Published online 2009 Jan 28. doi: 10.1007/s10048-009-0171-7

PMCID:: PMC2753863

Abstract Article PDF–183K

Select item 52892816.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 13924117.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 3547118.

Role of a pineal cAMP-operated arylalkylamine N-acetyltransferase/14-3-3-binding switch in melatonin synthesis

Surajit Ganguly, Jonathan A. Gastel, Joan L. Weller, Christian Schwartz, Howard Jaffe, M. A. A. Namboodiri, Steven L. Coon, Alison B. Hickman, Mark Rollag, Tomas Obsil, Philippe Beauverger, Gilles Ferry, Jean A. Boutin, David C. Klein

Proc Natl Acad Sci U S A. 2001 Jul 3; 98(14): 8083–8088. Published online 2001 Jun 26. doi: 10.1073/pnas.141118798

Correction in:: Proc Natl Acad Sci U S A. 2001 Nov 20; 98(24): 14186.

PMCID:: PMC35471

Abstract Article PDF–499K

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